Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0269 ATGGTTAGTGCAATACAAGCAGCCATTGGAGATTTGGTGTTGACTTTCTTGTGGGTCTTTCTTTCTTCCATGTTGGGATTGGCCACCAACGCCATAACAACGGCGCTTGATCTCCATCACGTGTCTTTCAATGGTTTTGATTACACTAGCGCTGTGATCACCGCTTCACTCATCTTTGTCCTCGTTTCGGTCTTCACCGTCATTGGCAATGCCTTGGGCGGTGCCAGTTTCAACCCCACCGGCAACGCTTCCTTCTATGCGGCTGGGCTTGGCTCTGACACCCTTCTCTCTATGGCTCTCCGTTTCCCTGCTCAGGCACTGGGTTCAGTGGGTGGTGTTCTGGCAGTTATGGAGGTTATGCCACCAAAATACAGGCACTTGATTGGAGGGCCTTCATTAAAGGTTGACTTGCATACTGGAGCTCTTGCAGAAGGGGTGCTGACGTTTATAATCACCTTTGTTGTTCTCCTCATCATGCTCAGGGGTCCTCGTAGTGAGGCGGGGAAGACTTGGTTGATGGCAATCTCAACTGTGGTTTTAATCATTGTTGGTTCAGGTTATACGGGGCCGGCAATGAATCCTGCCTTTGCCTTTGGTTGGGCATACTTTGACAACTGGCACAACACATGGGACCAATTCTATGTTTACTGGATTTGCCCCTTCTTTGGAGCAATATTGGCTTCATGGCTGTTCCGTATTGTCTTTCCCCCACCGGTGGTAAAACAGaagaaagcctga 738 0.4864 MVSAIQAAIGDLVLTFLWVFLSSMLGLATNAITTALDLHHVSFNGFDYTSAVITASLIFVLVSVFTVIGNALGGASFNPTGNASFYAAGLGSDTLLSMALRFPAQALGSVGGVLAVMEVMPPKYRHLIGGPSLKVDLHTGALAEGVLTFIITFVVLLIMLRGPRSEAGKTWLMAISTVVLIIVGSGYTGPAMNPAFAFGWAYFDNWHNTWDQFYVYWICPFFGAILASWLFRIVFPPPVVKQKKA 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0269 245 PRINTS Major intrinsic protein family signature 174 196 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu9g0269 245 PRINTS Major intrinsic protein family signature 97 116 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu9g0269 245 PRINTS Major intrinsic protein family signature 214 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu9g0269 245 PRINTS Major intrinsic protein family signature 143 161 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu9g0269 245 PRINTS Major intrinsic protein family signature 6 25 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu9g0269 245 Gene3D Glycerol uptake facilitator protein. 1 243 IPR023271 -
Ssu9g0269 245 PANTHER AQUAPORIN SIP1-1 3 245 - -
Ssu9g0269 245 Pfam Major intrinsic protein 3 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu9g0269 245 SUPERFAMILY Aquaporin-like 3 238 IPR023271 -
Ssu9g0269 245 PANTHER AQUAPORIN SIP1-1 3 245 IPR044222 GO:0015250
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0269 Ssu-Chr9 14029033 14033813 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0269 2 245 Major Intrinsic Protein MIP AT5G18290 56.048 2.70e-86 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0269 K09875 - gmx:100788738 444.121