Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0267 ATGGGAACCCCACAGTCCAACAACTTGCCACCAGGGTTTAGGTTCCACCCTACAGATGAAGAGCTCATTCTTCACTATCTAAGGAAGAAGGTGGCCTCTATACCTTTGCCGGTTTCCATCATTGCTGAGGTTGATATCTACAAGTTTGATCCATGGGAGCTACCAGATAAGGCTGCGTTTGGGGAGAAAGAGTGGTACTTTTTCAGTCCTAGAGACCGCAAGTACCCAAATGGAGCCAGGCCAAACAGGGCAGCTGCTTCAGGGTATTGGAAGGCCACAGGCACTGATAAGAACATAGTGGCATCATTGCCGGGAGGAGGAGGGGTCAGAGAGCACTTTGGTGTGAAGAAGGCTTTGGTGTTCTACAAAGGAAGACCCCCAAAGGGTGTCAAGACCAATTGGATCATGCATGAATATCGCCTTGTTGACACCAACAGACCCATTAGGCTCAAAGACACCTCCATGAGGTTGGATGAGTGGGTTCTATGCCGGATATACAAGAAGTCCAAACATGCTGTATCTTCAACCACAGAGGCAGCGGCAGTGCAAGTGATGAATGAGCAAGATCAAGCAGAAGAAGAGGAGCAAATCAAAGACACCCTTTTACCAATCTTCGAGAGTACTCTTGTCCCTCCTCCGCAGGCCACACTCATATCTCAGAAATCATTATCCTTCTCCAACCTGTTGGATGCCACAGACTACTCCATGCTCAGCAGCATCTTATCTGAGAACCATTCTCATTACCCAACTCCAAGTGAAGCCTTATTCAATTGTGAGAATCTGGATCAGGAATCCCCCCAAAACtactacaacaataataatagctaCTTGTTTCAGAAGAACCCTTCAGTTCCCAGGTGGAAAACATGA 870 0.4655 MGTPQSNNLPPGFRFHPTDEELILHYLRKKVASIPLPVSIIAEVDIYKFDPWELPDKAAFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKNIVASLPGGGGVREHFGVKKALVFYKGRPPKGVKTNWIMHEYRLVDTNRPIRLKDTSMRLDEWVLCRIYKKSKHAVSSTTEAAAVQVMNEQDQAEEEEQIKDTLLPIFESTLVPPPQATLISQKSLSFSNLLDATDYSMLSSILSENHSHYPTPSEALFNCENLDQESPQNYYNNNNSYLFQKNPSVPRWKT 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0267 289 PANTHER NAC TRANSCRIPTION FACTOR 56 5 249 - -
Ssu9g0267 289 SUPERFAMILY NAC domain 5 168 IPR036093 GO:0003677|GO:0006355
Ssu9g0267 289 ProSiteProfiles NAC domain profile. 9 168 IPR003441 GO:0003677|GO:0006355
Ssu9g0267 289 PANTHER OS01G0104200 PROTEIN 5 249 - -
Ssu9g0267 289 Pfam No apical meristem (NAM) protein 10 141 IPR003441 GO:0003677|GO:0006355
Ssu9g0267 289 Gene3D NAC domain 18 173 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0267 Ssu-Chr9 13866625 13868833 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0267 7 284 NAC Transcription Factor Family AT3G04070 57.193 2.17e-100 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ssu9g0267 NAM 4.1e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0267 - - gmx:100806421 487.263