Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0262 ATGATGGAAGAGCCTGTTGTGCTTAACAAAGGAGATGATCAGCCTTTGGATTTGCCTCCTGGTTTCAGGTTTCACCCCACAGATGAAGAGATCATCACTTGCTATCTCACAGAGAAAGTGTTGAATACAGGTTTCAGTGCAACTGCTGTTGGGGAGGCTGATTTGAACAAGTGTGAGCCTTGGGACTTGCCCAAGAAAGCAAAGATGGGGGGGAAAGATTGGTACTTCTTTTGCCAAAGGGATAGGAAGTATCCAACAGGCATGAGAACCAATAGAGCAACCCAATCTGGGTATTGGAAGGCCACTGGCAAAGACAAAGAGATTTACAAAGGGAGGAACAATCTTGTGGGGATGAAAAAGACCCTTGTGTTCTACAGAGGAAGAGCACCACAGGGAGAGAAGACAAATTGGGTTATGCATGAATTCAGATTGGAAGGCAAATTCGCATGCTACAACCTCCCTAAGGCTGCAAATgATGAATGGGTTGTGTGCAAGGTTTTCCACAAGAGCATTACAGATGTTAACAAAAGGGTCCCAATTAACCCTGGCCTTTTGAGAATGGACTCAATTGGAGAAGATCTATTTGATTTCTCTTCACTCCCACCTCTCGTGGACCCTCTCTATTACCAAACCTCAAACAAGCTCATTGACAGTGATTTCAAAGGTACTACTAGCACCAACACACCTTCATCATCATCAGCTAAACCACCATCAGATGGCTACTATCATCCCAACTtcttcatcaacaacaacaatcagcACCACCAGATAATGATGATGAAGCCAGAAGAGCACGGAAGCTGTGAGATTCCCACCAATAACTATGCCACCGCCAGCCAAGTGAACTTCAGTGCTCACAATAATCCAATGGGAATAAGCACAAACAATACCCTTCAAAATTCAAGCTCAACCTTCAGCATGTTCCCAGATTATTATATGCACCAAGGCAAGAACAGTTCCAAACAGTGCAAGATGGAGCAATTCTCAAACACCAACCAGCCTGTGGTCAGTGCCTCTCAAGACACGTGCCTGAGCAATGACAGAAACACTGACACTTCCTCAGTCGTTTCAAAGCAAGACATGGGAAAGAACAAGGCATTGTACGAGGATCTTGAAGGTCCTTCATCAGTTGCGACCCTCTCAGATTTGGAATGCCTGTGGGATGATTACTGA 1173 0.4399 MMEEPVVLNKGDDQPLDLPPGFRFHPTDEEIITCYLTEKVLNTGFSATAVGEADLNKCEPWDLPKKAKMGGKDWYFFCQRDRKYPTGMRTNRATQSGYWKATGKDKEIYKGRNNLVGMKKTLVFYRGRAPQGEKTNWVMHEFRLEGKFACYNLPKAANDEWVVCKVFHKSITDVNKRVPINPGLLRMDSIGEDLFDFSSLPPLVDPLYYQTSNKLIDSDFKGTTSTNTPSSSSAKPPSDGYYHPNFFINNNNQHHQIMMMKPEEHGSCEIPTNNYATASQVNFSAHNNPMGISTNNTLQNSSSTFSMFPDYYMHQGKNSSKQCKMEQFSNTNQPVVSASQDTCLSNDRNTDTSSVVSKQDMGKNKALYEDLEGPSSVATLSDLECLWDDY 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0262 390 Pfam No apical meristem (NAM) protein 19 144 IPR003441 GO:0003677|GO:0006355
Ssu9g0262 390 SUPERFAMILY NAC domain 16 169 IPR036093 GO:0003677|GO:0006355
Ssu9g0262 390 PANTHER NAC DOMAIN-CONTAINING PROTEIN 87 8 343 - -
Ssu9g0262 390 Gene3D NAC domain 27 172 IPR036093 GO:0003677|GO:0006355
Ssu9g0262 390 MobiDBLite consensus disorder prediction 339 359 - -
Ssu9g0262 390 ProSiteProfiles NAC domain profile. 18 169 IPR003441 GO:0003677|GO:0006355
Ssu9g0262 390 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0262 Ssu-Chr9 13670773 13672428 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0262 1 388 NAC Transcription Factor Family AT5G18270 49.750 3.69e-116 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ssu9g0262 NAM 1.1e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0262 - - gmx:100813376 587.415