Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0259 ATGTACTATCAGCAGCAGCAACAAGCTAAGAACATGCATGCTTTAAGGATGCACAGCCCCACTGAGAAGCATATGATGATGCAAGGAGGCAACGGGACTGGTGATTCAGGACTTGTTCTCTCAACTGATGCTAAGCCTAGACTAAAATGGACACCGGATCTTCATGAACGGTTCATAGAAGCAGTCAATCAACTTGGAGGAGCAGACAAAGCTACACCAAAAACAGTATTGAAACTGATGGGGATTCCTGGACTTACTCTCTACCACTTAAAGAGTCATCTACAGAAGTACAGGATCAGTAAAAGTATGCATGGACAAACCAATACTGGCAACAATAAAATTGGATTTgataatgaatttatcttaccAGCATCAACCACAGAGGCAGCAGGCAGAATGTCAGAAGCAAGTGGAATTCAAATGAAACATTTAAGCATAGGCCTACAGACAAACAAAAATTCAGAAATAAATGACGCGTTACAGATGCAAATTGAAGTACAAAGAAGACTACATGAGCAGCTTGAGGTACAACGACACTTACAGCTAAGGATAGAGGCACAAGGGAAGTACCTTCAGGCAGTGTTGGAAAAAGCACAAGAGACACTAGGAAGACAAAATTTAGGTGCTGAGGGAGTTGAAGCTGCCAAGGTTCAACTATCTGAACTGGCATCCAGAGTTTCCTCTCAATGCCTTGACTCTAAATTTTCAGATCTGAAAGAATTGCAGGTCTTGTGGCCTCAGCAAGCACAAGAGGGCCAAGCCACTGATTGTTCAATGGGCAGTTTCTTAACCTATAGTGAGGTATCTCAAAGAGACAGAGAAACACATAACATTGGCCTGAATTTGAGAGCCTATAATGGCCCTCCATTTTCTGTTTCAAAAGAGTGTGTGGAAGAGTCTATTCACCTAAAGCCTGATCTCACATTGTGTGAAGAAGTGAAGCAGAATATGATGTTTCTTTCCTCATCAAGTGATAATAAAGTAGTGAAGGGAAATTTTTTACCAGAAAGGCCCTCAAGCCTCTTATCCATGAATGTAGGagttcaagaagaagaaaaatttggGAGAACAACTGTTTCAAAGGAAGAAGGCTGGAAGGGAAGAGAGAGCACTGAAACTGGGAGAGTGCCAGTTAAAGTGAACCATGAGAAGATTTCTCAAGATTATAGACTTGCTGACTTTGAAGTGAAACTGGACCTGAATTCTCATGATGATAATGATGCTTCTTCTCACTGCCAACAGTTAGATTTGAATGGTTTTAGCTGGAATTGCTAG 1275 0.4031 MYYQQQQQAKNMHALRMHSPTEKHMMMQGGNGTGDSGLVLSTDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVLKLMGIPGLTLYHLKSHLQKYRISKSMHGQTNTGNNKIGFDNEFILPASTTEAAGRMSEASGIQMKHLSIGLQTNKNSEINDALQMQIEVQRRLHEQLEVQRHLQLRIEAQGKYLQAVLEKAQETLGRQNLGAEGVEAAKVQLSELASRVSSQCLDSKFSDLKELQVLWPQQAQEGQATDCSMGSFLTYSEVSQRDRETHNIGLNLRAYNGPPFSVSKECVEESIHLKPDLTLCEEVKQNMMFLSSSSDNKVVKGNFLPERPSSLLSMNVGVQEEEKFGRTTVSKEEGWKGRESTETGRVPVKVNHEKISQDYRLADFEVKLDLNSHDDNDASSHCQQLDLNGFSWNC 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0259 424 Gene3D - 44 102 - -
Ssu9g0259 424 Pfam Myb-like DNA-binding domain 47 98 IPR001005 -
Ssu9g0259 424 SUPERFAMILY Homeodomain-like 44 100 IPR009057 -
Ssu9g0259 424 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 42 102 IPR017930 -
Ssu9g0259 424 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 4 423 - -
Ssu9g0259 424 MobiDBLite consensus disorder prediction 355 374 - -
Ssu9g0259 424 Coils Coil 157 177 - -
Ssu9g0259 424 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 4 423 IPR044848 GO:0003700
Ssu9g0259 424 Pfam MYB-CC type transfactor, LHEQLE motif 155 201 IPR025756 -
Ssu9g0259 424 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 45 100 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0259 Ssu-Chr9 13612785 13615156 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0259 77 423 G2-like Transcription Factor Family AT3G04030 47.714 6.58e-89 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Ssu9g0259 Myb_DNA-binding 5e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0259 - - gmx:100786282 753.436