Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0257 ATGGAGAATGATATGGAGGGTGTGCATTGGTGCAACATATGCTCTAAAATGGTGAATCCAATGAGTGATGCTGAGAACATATGCCCATTTTGTGAGACAGAATTTTCTGAGGTAATGGACAACCTAAGGGACCAGAATGATGTTATTGACTTAAGGTCAGCTTGGGTGTTCTCACTTTATGCCCCAATTTTTCTTGGATTGATGGGTGCTTTCAGCCCTTCTATAGCAAGAATTGCTCCACAAGGAAGTAGCAGCTCAAGGGGGGAGGAAGAAGTTGAGCAAGAGAGGGAAAATGAGCTTGTGCTTGGGAGAAGGAGAAGGACTTCAACTTACATGATGCACCTCTTCCAGAGTCTTCATGTTAGGATGGTGTCTGAATTTGAAAACCTTGATGACAATAGGAACATGGATAGCAGCAGTATACTTGTGATTGATCCATTCAATGAAGGTGCATTGATTGTGAGAGGACCTAACTTGAACCACCACACAAGTAGTCCAAATGAGAATAATGTTGTTGGCAGCTCCTTGAATGACCTTGTGGTAGGATCCGGCTTTGACTTGTTGTTGCAGCATTTGGCACAGATTGGTCCTGGTGGCTATGCAAGTGTGAACCCTCCAGCACATAAGGCAGCAATTGAAGCAATGCCTAGTGTGACTAGTGAGGAAAAGTTGCAGTGCACAGTGTGCTTGGAGGATGTTGAGATCGGGAGTGAAGCAAAGGAGATGCCATGTAAGCATAAGTTCCATGGTGACTGCATTGTCTCATGGCTGAAACTTAATGGTTCTTGTCCAGTTTGCAGGTTTCAGATGCCATCTGAGGATTCTAATGTTGCAGCCAATGTGGGAATTGGAAATGGGGACAATCAGAACAGTGAGCTAGTCAGAGCTGGAGAAGAGAGACCAAGAAATGGAAGGAGGAATTGGTTTCCAGCGCTGCAGtcatttaacaattttcttCCTTCTCCATGA 969 0.4407 MENDMEGVHWCNICSKMVNPMSDAENICPFCETEFSEVMDNLRDQNDVIDLRSAWVFSLYAPIFLGLMGAFSPSIARIAPQGSSSSRGEEEVEQERENELVLGRRRRTSTYMMHLFQSLHVRMVSEFENLDDNRNMDSSSILVIDPFNEGALIVRGPNLNHHTSSPNENNVVGSSLNDLVVGSGFDLLLQHLAQIGPGGYASVNPPAHKAAIEAMPSVTSEEKLQCTVCLEDVEIGSEAKEMPCKHKFHGDCIVSWLKLNGSCPVCRFQMPSEDSNVAANVGIGNGDNQNSELVRAGEERPRNGRRNWFPALQSFNNFLPSP 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0257 322 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 320 - -
Ssu9g0257 322 MobiDBLite consensus disorder prediction 79 98 - -
Ssu9g0257 322 SMART ring_2 226 266 IPR001841 -
Ssu9g0257 322 Pfam Ring finger domain 225 267 IPR001841 -
Ssu9g0257 322 PANTHER C3HC4-TYPE RING ZINC FINGER PROTEIN 2 320 - -
Ssu9g0257 322 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 200 273 IPR013083 -
Ssu9g0257 322 ProSiteProfiles Zinc finger RING-type profile. 226 267 IPR001841 -
Ssu9g0257 322 SUPERFAMILY RING/U-box 215 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0257 Ssu-Chr9 13588609 13589577 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0257 89 285 C3H Transcription Factor Family AT1G26800 31.313 3.91e-24 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0257 K11982 - gmx:100790855 584.719