Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0253 ATGGACATGGATGTTTGCCGAAATGTATCAGTTTCAAGTGAGTGTAAGCAAGAGCTTCCCACCCTTGATGACCTTTTCTCTCATCAGAACACGGAAGTGGATTTTGGCATGGAATGGTTATCAGTGTTTGTGGAAGACTGTTTTTCTAGTAGGCCTAGTTGCCTTTTGTCACCCCCTGCTGTTCAAACCACAAGCACTATCACCAAGCCTTCAAGCACAATGCAAAGACCCCAACAGAATCCTTGTCCTTTGCAGAATTTTGCTGTGCCAGGGAGAGCCAGGAGCAAGAGGAAGAGGCTTTCAGCCCCTAGAATAAAGGACACTTTAAGCACATGGTCAAGGCACTTGAACACTCAAAGTGATGGGTTGAGTTCTGACCCTCCTCTTTTGAAACAAGCTTATTGGTTGGCCGATAGTGAACTCATTGTCCCCAAGAAGAAGGATGAGCAAGAAGTGGAGGAAGAGGGGGTTGTGGTGGTGAGGAAGGAGAAATTGGGGGATTATTGTGAGGGTGaagttaacaataataataatgtgggGCAGCACCACCCAATTCCAAGAAGGTGCACACATTGTCTGGCTCAGAGGACCCCACAGTGGAGGGCAGGACCATTGGGTCCAAAGACActatgcaatgcatgtggggtGAGGTACAAATCTGGAAGGTTGCTGCCAGAGTATAGGCCAGCCAAGAGTCCTACTTTTGTAAGCTATTTACATTCCAATTCACACAAGAAAGTCATGGAGATGAGAATGGGTGTTCTGTCATCCAGTCCTGCAGAGAAGTAG 789 0.4474 MDMDVCRNVSVSSECKQELPTLDDLFSHQNTEVDFGMEWLSVFVEDCFSSRPSCLLSPPAVQTTSTITKPSSTMQRPQQNPCPLQNFAVPGRARSKRKRLSAPRIKDTLSTWSRHLNTQSDGLSSDPPLLKQAYWLADSELIVPKKKDEQEVEEEGVVVVRKEKLGDYCEGEVNNNNNVGQHHPIPRRCTHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKKVMEMRMGVLSSSPAEK 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0253 262 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 3 259 - -
Ssu9g0253 262 Gene3D - 181 249 IPR013088 GO:0006355|GO:0008270
Ssu9g0253 262 ProSitePatterns GATA-type zinc finger domain. 189 214 IPR000679 GO:0006355|GO:0043565
Ssu9g0253 262 ProSiteProfiles GATA-type zinc finger domain profile. 187 219 IPR000679 GO:0006355|GO:0043565
Ssu9g0253 262 CDD ZnF_GATA 188 235 IPR000679 GO:0006355|GO:0043565
Ssu9g0253 262 PANTHER GATA TRANSCRIPTION FACTOR 3 259 - -
Ssu9g0253 262 SMART GATA_3 183 237 IPR000679 GO:0006355|GO:0043565
Ssu9g0253 262 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 185 247 - -
Ssu9g0253 262 Pfam GATA zinc finger 189 223 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0253 Ssu-Chr9 13444507 13445697 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0253 37 251 C2C2-Gata Transcription Factor Family AT4G32890 42.152 7.63e-43 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Ssu9g0253 GATA 1.1e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0253 - - gmx:100776805 405.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1791 4 32196276 32197385 Ssu9g0253 9 13444507 13445697 PCT