Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0225 ATGGAAATTCAATTCCAGCATCCAAAGCAGCACTTAAGACCAAGCACACCAACAAAAGGAGGCAAATTCAAAGAGAGAAACAACAAAAACAGAAACAAGTATATTGGTGTGAGGCAAAGGGCGTCAGGGAAATGGGTTGCTGAGATCAAAGACACAACACAAAAGATAAGAATGTGGCTTGGCACATATGAGACAGCAGAGGAAGCAGCCAGAGCTTATGATCAAGCTGCATGCCTTCTTCGCGGATCCAACACTCGCACCAACTTCATCACACGTGTGTCCTTGGATTCCCCTCTTGCTTCACGGATTCAGAATCTTCTCAACAACAGAAAAGGCACCAACCAACAAGAACAAGATGTGGAAACATGTGCCACAAGGGTCAACAACAACCAACAGGGGTTGGATCTGACAGAAGGGGTTAGTCTCCCACAACGTGGTGAATTAAGATTTGAATCTCCGTTGAAAGAGGTGTTCGCATTTAGTATCCCGACCGTGTCTCAAACAAGATTGTCTTCAAAAAAGGACACCagagaagaaaagaagggtCAACAGCACCACTATGAGACAACAACCCAACACACCCAACTATTTGATGATGCTTACAGACCTGATTTGAGCAATTTCATGGAGTTTGAGTCAGGTTCTCAGAACAATCCTTCATGGGGTTTTGAAGCTGTTTTTGATCGTTTTCCCTTTGGCCAAGCAATGGATGTAGCAAACCAGACTGATATAGCTGGGTTGGAGCTTCCAGAGTTTGAAAGGATGAAGGTTGAAAGACAAATATCAGCTTCACTATATGCAATTAATGGTGTGCAAGAGTACATGGACACTGTTCAAGACTCTAATAATGAAGCCCTCTGGGATCTTCCACCCCTGTGCTCATTTTTGTGTTAA 894 0.4284 MEIQFQHPKQHLRPSTPTKGGKFKERNNKNRNKYIGVRQRASGKWVAEIKDTTQKIRMWLGTYETAEEAARAYDQAACLLRGSNTRTNFITRVSLDSPLASRIQNLLNNRKGTNQQEQDVETCATRVNNNQQGLDLTEGVSLPQRGELRFESPLKEVFAFSIPTVSQTRLSSKKDTREEKKGQQHHYETTTQHTQLFDDAYRPDLSNFMEFESGSQNNPSWGFEAVFDRFPFGQAMDVANQTDIAGLELPEFERMKVERQISASLYAINGVQEYMDTVQDSNNEALWDLPPLCSFLC 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0225 297 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-11-LIKE 1 285 - -
Ssu9g0225 297 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 285 - -
Ssu9g0225 297 MobiDBLite consensus disorder prediction 1 30 - -
Ssu9g0225 297 Gene3D AP2/ERF domain 32 92 IPR036955 GO:0003700|GO:0006355
Ssu9g0225 297 SUPERFAMILY DNA-binding domain 33 90 IPR016177 GO:0003677
Ssu9g0225 297 CDD AP2 33 89 IPR001471 GO:0003700|GO:0006355
Ssu9g0225 297 PRINTS Ethylene responsive element binding protein signature 56 72 IPR001471 GO:0003700|GO:0006355
Ssu9g0225 297 PRINTS Ethylene responsive element binding protein signature 34 45 IPR001471 GO:0003700|GO:0006355
Ssu9g0225 297 MobiDBLite consensus disorder prediction 169 191 - -
Ssu9g0225 297 ProSiteProfiles AP2/ERF domain profile. 33 90 IPR001471 GO:0003700|GO:0006355
Ssu9g0225 297 MobiDBLite consensus disorder prediction 171 187 - -
Ssu9g0225 297 SMART rav1_2 33 96 IPR001471 GO:0003700|GO:0006355
Ssu9g0225 297 Pfam AP2 domain 33 82 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0225 Ssu-Chr9 12865187 12866147 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0225 197 297 AP2-EREBP Transcription Factor Family AT5G19790 33.913 6.18e-07 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu9g0225 AP2 1.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0225 K09286 - gmx:100792432 375.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1769 4 31819196 31820011 Ssu9g0225 9 12865187 12866147 PCT