Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0222 ATGCCTAATGAGGAAATTGATAACAAGTCCAAAGAGCAGGATGAGAAAGATGGTTATGTTAGTGAGGATAGGCCGGGGTTAGGTTTAGGTTTCGGTATGGGGTCTGCTAGCACTTCTGGGTCTGGTTTAGGTTTTCAATCTGGTAATGCTGCGAATGGTTCCTACAGAAATGATGATTCTGATgagaatgatgatgataatttcTTGCCTACAGCGTTTGGGAAGAAGATTAAGGAGGGGGCGATGagaagggaaaaggaaagggaGAGGGAGAGGTTGGAGAAGAAGAGGGGGAAGCATCAGAGTTTTGATCAAGATGGGTTTGGTGATGTTGGGAAATTTGAGAAGCATACGAAAGGGATAGGGATGAAGCTGTTGGAGAAGATGGGTTATAAAGGAGGTGGGCTTGGGAAGAATGAGCAAGGTATTATGGCTCCTATTGAGGCAAAATTGAGGGCCAAGAATTCTGGTATTGGGTTTAATGAGTCTAAGGAGACTATGCCGTTGCCTGCTTTGCAGCAAGAGAAGAAGATTGTGCCGGAAGTCACCCAACCTGCGGTTGGCAGAATGAAGGAGAGGTTATGGTCAAAGCAAGCcagattgaagaagaaaaaggaggaagagTATATAACTGCTGAGGAGTTGTTGGCGAGCAAGCAAGAACAAGAGTTGGAGGTTGTTCAGAAGGTTTACGATATGAGGGGGCCACAGGTTCGAGTATTAACAAATTTGTCTGATTTGAATGCTGAggagaaagcaaaagaaaatgatgtcCCAATGCCGGAACTTCAGCATAATGTAGCTTTAATAGTTCGGTTGGCCGAGGCTGACATCCAAGAGATTGACAGAGATTtgaggagagagagggagaccGCACTTAgcttgaaaaaggaaaaagagaagttAGAAACTGAGGCAGCGTTTCAAAAGAAGCAGCTGGATAATATGGAGGAAATAATGAGTGTGTTGGACCGTGTTGGAGAAGAAAACACTTTGGGAGCGTTAACATTGGATTCCCTTGCTCAATGTTTTAGGGACTTACGCAAACGATGTGCTGATAACTACAAGTTGTGTAACTTGTCATGTATTGCTTGCTCATATGCTCTACCTCTGTTTATCAGAGTGTTCCAAGGATGGGATCCTCTTCGAAATCCATCTCATGGGTTGGAGTTGGTATCACAGTGGAAGGCATTGCTTCAAGGAGAAGATTCTGTTGATATATGGGATGTATCATCACCTTATACTCAATTGGTTTCAGAGGTTGTATTGCCAGCTGTCAGAATATCTGGTATCAATACCTGGCAGGCACGGGATCCTGAGCCAATGTTATGGTTTCTGGAATCGTGGGAAAGTTACTTCCTTCTTCAGTCCTTGCTACCATATTAG 1386 0.399 MPNEEIDNKSKEQDEKDGYVSEDRPGLGLGFGMGSASTSGSGLGFQSGNAANGSYRNDDSDENDDDNFLPTAFGKKIKEGAMRREKERERERLEKKRGKHQSFDQDGFGDVGKFEKHTKGIGMKLLEKMGYKGGGLGKNEQGIMAPIEAKLRAKNSGIGFNESKETMPLPALQQEKKIVPEVTQPAVGRMKERLWSKQARLKKKKEEEYITAEELLASKQEQELEVVQKVYDMRGPQVRVLTNLSDLNAEEKAKENDVPMPELQHNVALIVRLAEADIQEIDRDLRRERETALSLKKEKEKLETEAAFQKKQLDNMEEIMSVLDRVGEENTLGALTLDSLAQCFRDLRKRCADNYKLCNLSCIACSYALPLFIRVFQGWDPLRNPSHGLELVSQWKALLQGEDSVDIWDVSSPYTQLVSEVVLPAVRISGINTWQARDPEPMLWFLESWESYFLLQSLLPY 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0222 461 Coils Coil 202 222 - -
Ssu9g0222 461 PANTHER TUFTELIN-INTERACTING PROTEIN 11-RELATED 34 455 IPR045211 GO:0000390
Ssu9g0222 461 SMART G-patch_5 116 161 IPR000467 GO:0003676
Ssu9g0222 461 MobiDBLite consensus disorder prediction 34 56 - -
Ssu9g0222 461 Coils Coil 271 319 - -
Ssu9g0222 461 MobiDBLite consensus disorder prediction 1 111 - -
Ssu9g0222 461 ProSiteProfiles G-patch domain profile. 118 163 IPR000467 GO:0003676
Ssu9g0222 461 MobiDBLite consensus disorder prediction 68 111 - -
Ssu9g0222 461 Pfam GC-rich sequence DNA-binding factor-like protein 337 451 IPR022783 -
Ssu9g0222 461 MobiDBLite consensus disorder prediction 1 22 - -
Ssu9g0222 461 PANTHER TUFTELIN-INTERACTING PROTEIN 11 34 455 - -
Ssu9g0222 461 Pfam G-patch domain 118 159 IPR000467 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0222 Ssu-Chr9 12813792 12815177 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0222 118 178 C2H2 Transcription Factor Family AT5G26610 40.984 1.42e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0222 K13103 - gmx:100781621 798.119