Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0204 ATGGATTCAAACGGGAGTCTACGTGCTAATACCTGGGCAAGGTCGTTGTCCTTAATCTCTCCTGCAAGTGGTTTATCCTCAGATCCTCTCTCTTTTCCAGGTTTTGGTTTGCAGCATAATCAACTCAAATGGGATGATCCCCCAAATTCAGATTACAGGATCAGGGCAGAAACACCTTTCAAAGAATTCAACCAGCCCTCTCAAACCCACTCTCTGCTTCCTTGCAACTCAAACAATGAGATTGAATTCACTGATCAAGAAAACTGTCATCCAGTTGAATCATCGCAAACCAGTAGACTCCAAGATTGGGACCCCAGTGTGATGTTGAATAACCTGTCCTTCTTGGAAGAAAAGATTCATCAGCTCCAGAATCTGGTGCATTTGATTGTTAATCAAAAGGGCACTGGACAACCTAGTGAACTTGTAACTCAGGAACAGCAGCTCATCACAACTGATCTTACATCAATCATTATTCAATTGATCTCTACTGCCGGTAGTCTTCTCCCTTCTGTTAGGCATAATCTTATAAACACTAGTCCATTGGTTGGACAGATTGACCAGCTTCGTGGGACTACCGTTCCTTCTGGGACGACTGTTCCTTCTGGTGCTGGTGCAAGTAGCGGCTGTATTCAACCACAAAATGatagtggaaaaaaattatctgaTCAGTCCATGCAGACTGATCTacctaataatattgaaatggaGCAAAACTACAATATGGTAGAACATGAATTTAAAGATGAGGAAGATGCAGATGATGGAGAAAACCTTGCCCCTGGTTCATATGAGATTTTAcaattagaaaaagaagaaatcctTGCACCTCATACCCATTTCTGTACAATTTGTGGGAAGGGGTTCAAGAGAGATGCAAATCTTCGAATGCACATGCGGGGCCATGGTGACGAGTACAAAACCCCAGCGGCGCTTGCAAAGCCGCACAAAGAATCTGGGTCACCAAAGCTTATCAAGAGGTATTCCTGCCCCTATCCTGGCTGCAAGCGCAACAAGGATCACAAGAAGTTTCAACCTCTGAAGACTATTTTATGTGTCAAAAACCATTACAAAAGGACACATTGTGACAAGAGTTACACTTGCAGCAGATGCAACACCAAGAAGTTTTCAGTCATGGCTGATCTAAAAACTCATGAAAAACACTGTGGTAAGGATAAATGGCTTTGTTCATGTGGCACAACATTTTCTAGGAAAGACAAGCTTTTTGGGCACATTGCTCTTTTCCAAGGCCATACACCAGCCATTCCCCTGGATGACACTAAAGGGATAGCTGAGCCACCCATTCATGACAGCAAAGAAACCAGGAAGGTAGGGAGTATGAACTTCACTTTTGGATCAAATCCTTCAAATGCAAATGGAGTTCAAGATGTCATGGATGTAAAAGGCAATAGTGATGATCCTATCAATTATTTCTCATCATTGAACTTTGAAGCCAACTTTGGCGGGTTTAATGAATTCACCAGACCTCTATTTGATGACCCAGAAGGTTCATTCTCTTTTGTCATGCCTGGATCTTTTAAAACTGGAGGGGAATCAAGTTCAGATAATCTTTTGTAA 1575 0.4095 MDSNGSLRANTWARSLSLISPASGLSSDPLSFPGFGLQHNQLKWDDPPNSDYRIRAETPFKEFNQPSQTHSLLPCNSNNEIEFTDQENCHPVESSQTSRLQDWDPSVMLNNLSFLEEKIHQLQNLVHLIVNQKGTGQPSELVTQEQQLITTDLTSIIIQLISTAGSLLPSVRHNLINTSPLVGQIDQLRGTTVPSGTTVPSGAGASSGCIQPQNDSGKKLSDQSMQTDLPNNIEMEQNYNMVEHEFKDEEDADDGENLAPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKESGSPKLIKRYSCPYPGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYTCSRCNTKKFSVMADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDDTKGIAEPPIHDSKETRKVGSMNFTFGSNPSNANGVQDVMDVKGNSDDPINYFSSLNFEANFGGFNEFTRPLFDDPEGSFSFVMPGSFKTGGESSSDNLL 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0204 524 SUPERFAMILY beta-beta-alpha zinc fingers 277 304 IPR036236 -
Ssu9g0204 524 MobiDBLite consensus disorder prediction 194 223 - -
Ssu9g0204 524 Gene3D Classic Zinc Finger 263 329 - -
Ssu9g0204 524 Coils Coil 232 252 - -
Ssu9g0204 524 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 50 511 IPR044300 GO:0010044|GO:0010447
Ssu9g0204 524 SMART c2h2final6 327 360 IPR013087 -
Ssu9g0204 524 SMART c2h2final6 365 387 IPR013087 -
Ssu9g0204 524 SMART c2h2final6 279 301 IPR013087 -
Ssu9g0204 524 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 50 511 - -
Ssu9g0204 524 ProSiteProfiles Zinc finger C2H2 type domain profile. 279 306 IPR013087 -
Ssu9g0204 524 ProSitePatterns Zinc finger C2H2 type domain signature. 281 301 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0204 Ssu-Chr9 12065150 12066724 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0204 246 524 C2H2 Transcription Factor Family AT1G34370 67.918 2.28e-130 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu9g0204 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0204 - - gmx:100500526 941.799