Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0180 ATGGGGAGAGAGTTCTGGGGTTTTGTTTTCATCTGGTGGGTGTTCTTGGCTCACCCATTGTGGTCGGTTTCTGCTAACATGGAAGGTGATGCCTTACATAGCCTGAGGACAAATTTACAGGATCCTAACAATGTTTTGCAAAGTTGGGACCCTACGCTGGTCAATCCATGCACGTGGTTTCATGTAACTTGCAACAATGATAATAGTGTCATAAGAGTGGATCTGGGAAATGCTGCTTTGTCTGGTCAACTTGTTCCCCAGATTGGCCAGCTCAAAAACTTACAGTATTTGGAGCTTTACAGCAATAACATTAGTGGCCCAATTCCAAGTGACCTGGGGAATCTTACTAACTTGGTGAGCTTGGATCTGTATCTAAACCGTTTCAGTGGACTTATCCCAGAGTCACTGGGCAAGTTGTCAAAATTGCGTTTCCTCCGGCTTAACAACAACAGCTTGACTGGTCCTATTCCCATGTCACTGACTAGTATTTCAGCTCTCCAAGTGCTGGATTTGTCTAACAACCGTCTCTTGGGTGTGGTTCCTGATAATGGCTCCTTCTCATTATTCACTCCTATCAGTTTTACTAACAACTTGGATCTATGTGGCCCAGTCACTGGGCACCCTTGTCCTGGGTCTcctccattctctcctcctCCCCCTTTCGTCCCACCGCCCCCCATCTCAGCTCCAGCAAGTGGTGCCACTGGTGCAATAGCTGGAGGAGTTGCTGCAGGTGCTGCTCTGTTATTTGCTGCTCCTGCAATTGCATTTGCATGGTGGCGTCGAAGGAAACCACAGGAATTTTTCTTTGATGTACCTGCTGAAGAGGATCCTGAAGTACACCTTGGGCAGCTTAAGAGGTTCTCTCTACGAGAACTGCAAGTTGCCACAGATACTTTCAGCAATAAGAACATTCTTGGAAGGGGAGGATTTGGTAAGGTGTATAAAGGACGCTTGGCAGATGGTTCACTGGTTGCTGTGAAAAGATTGAAAGAGGAGCGCACGCCTGGTGGGGAGCTTCAGTTTCAGACTGAAGTAGAGATGATCAGCATGGCTGTGCACCGAAATCTCCTCCGTTTACGTGGGTTCTGTATGACACCAACTGAAAGGCTACTTGTATATCCTTACATGGCTAATGGAAGTGTTGCCTCATGCTTAAGAGAGCGTCCGGCACATCAACAACCCCTTGATTGGCCAACAAGGAAACGAATAGCATTGGGATCAGCAAGGGGTCTTTCATATTTGCATGATCATTGTGACCCAAAGATTATTCATCGTGATGTAAAAGCTGCAAACATACTATTGGACGAGGAGTTTGAGGCTGTTGTTGGGGATTTTGGGTTGGCTAAGCTGATGGACTACAAGGACACCCATGTTACAACTGCTGTACGGGGCACAATTGGGCACATTGCACCAGAGTACCTATCTACTGGTAAATCTTCAGAGAAAACTGATGTCTTTGGTTATGGTATAATGCTTCTGGAGCTGATCACTGGACAAAGGGCTTTTGACTTAGCTCGTCTTgcaaatgatgatgatgttatgTTGCTGGATTGGGTATGTTGA 1566 0.4527 MGREFWGFVFIWWVFLAHPLWSVSANMEGDALHSLRTNLQDPNNVLQSWDPTLVNPCTWFHVTCNNDNSVIRVDLGNAALSGQLVPQIGQLKNLQYLELYSNNISGPIPSDLGNLTNLVSLDLYLNRFSGLIPESLGKLSKLRFLRLNNNSLTGPIPMSLTSISALQVLDLSNNRLLGVVPDNGSFSLFTPISFTNNLDLCGPVTGHPCPGSPPFSPPPPFVPPPPISAPASGATGAIAGGVAAGAALLFAAPAIAFAWWRRRKPQEFFFDVPAEEDPEVHLGQLKRFSLRELQVATDTFSNKNILGRGGFGKVYKGRLADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPAHQQPLDWPTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVC 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0180 521 ProSiteProfiles Protein kinase domain profile. 300 521 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu9g0180 521 Pfam Leucine rich repeat N-terminal domain 25 65 IPR013210 -
Ssu9g0180 521 ProSitePatterns Protein kinases ATP-binding region signature. 306 328 IPR017441 GO:0005524
Ssu9g0180 521 Gene3D Phosphorylase Kinase; domain 1 269 376 - -
Ssu9g0180 521 Pfam Protein kinase domain 301 504 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu9g0180 521 Gene3D Transferase(Phosphotransferase) domain 1 377 521 - -
Ssu9g0180 521 PANTHER LEUCINE-RICH REPEAT DOMAIN, L DOMAIN-LIKE PROTEIN-RELATED 14 520 IPR031048 GO:0004675|GO:0005102|GO:0006468
Ssu9g0180 521 Pfam Leucine rich repeat 117 176 IPR001611 GO:0005515
Ssu9g0180 521 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 14 520 - -
Ssu9g0180 521 SUPERFAMILY L domain-like 28 191 - -
Ssu9g0180 521 SUPERFAMILY Protein kinase-like (PK-like) 279 507 IPR011009 -
Ssu9g0180 521 SMART serkin_6 300 520 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu9g0180 521 ProSitePatterns Serine/Threonine protein kinases active-site signature. 423 435 IPR008271 GO:0004672|GO:0006468
Ssu9g0180 521 Gene3D Ribonuclease Inhibitor 24 211 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0180 Ssu-Chr9 11118744 11129147 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0180 1 520 Receptor kinase-like Gene Family AT1G71830 88.889 0.0 851
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Ssu9g0180 Pkinase 2.5e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0180 K13418 - gmx:100813918 916.761