Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0165 ATGGATTTCAGTGAGGGTTATGTATCAAATGAGCATCGCGAGCTTCATCGATCTGCAACCGAAAGTGCAGATCCGTTATCTGTTTCTCCATTGCAACTTTCTCCTAAGTCACCAAGATCTCCAAAATCTCCAAGGTCCCCTAAATCTCCCAGGTCACCAAAATCTCCGAGGTCCCCAAAGGTGCAAGGCAAGTGCAGCAATCTAAGTCCAAGGAATCATAGAcaatcatattttcaaaaagatgGACGTCCAAAGAAAGGTGGTTCTGGGGGAAAAGGTACTTGGGGTGGATTGCTTGATACAGATGACACAAACGTTCTTGATCCTAATGATCCAAACTATGACAGCAGTGAGGAATATGACCattcaaatgaaaagaaaccGACAACATATCtcgaggaatacaagaaaaaagtTACAATAATAGTGGAGGAATACTTTGCCACTGATGATGTTGTTGCAACAATGAATGAAGTTAAAGACTTGGGAAAACCAGAGTATGGctattattttgtgaaaaaacttGTCTCTATGTCCATGGACAGACatgacaaagaaaaagaaatggctGCTATTCTGTTATCTGCACTTTATGCTGACATATTTGATCCTTCACAAGTTTACAAAGGCTTCAGCAAATTAGTTCAATCAGCAGATGACTTGATTGTAGATATACCAGACACGGTTGAAGTTCTAGCACTTTTCATAGCTCGAGCCGTGGTTGATGACATACTTCCTCCTGCATTTTTGAAGAAACAGATGGCCTACTTATCCAAAGATTCAAAAGGGGTTGAGGTCTTGAAAAAAACTGCGAAAAGCTATCTAGCAGCCCCTCTGCATGCGGAAATCATAGAGCGATGCTGGGGAGGTAGTAAGAGCACCACAGTTGATGATGTTAAAGCtaagataaacaattttttgaagGAGTATGTTGTAAGTGGTGACAAGAAAGAAGCCTTTAGATGCATCAAAGATCTGAAAGTTCCTTTCTTCCATCACGAAATAGTGAAACGGGCTCTTATAATGGCAATGGAGAGACGTCAGGCAGAATCCCCACTGTTAGACATGTTGAAGGAAGCAGCTGAAGAAGGTTTCATTAACTCTAGCCAAATGTCTAAAGGGTTTGGTCGGTTGATTGACACAGTTGATGACTTATCACTTGACATACCAAATGCACGTGGAATACTGCAGCAACTAATGTCTAAAGCAGCATCTGAGGGTTGGTTATGTGTGTCATCTTTGAAATCATTTTCAGTGGAGCCTGAAAAGAACACAATAGAAGATAGTGCTGCCAAAAGTTTCAAGGTAAAGACTCAGTCCATCATTCAAGAGTACTTCTTATCAGGTGATATATCGGAAGTAAATAGCTGTCTAGAACAAGCAAACAGCAACAACTGTGCTGCACTCAATGCcatctttattaaaaaactgATAACTCTGGCAATGGATAGGAAGAATAGGGAGAAGGAAATGGCTTCTGTGTTGCTGTCATCTTTGTGCTTCCCAGCTGATGATGTTGTGAGTGGTTTTTTGATGTTGATAGAGTCAGCAGATGATACTGCTCTGGACAATCCTGTTGTTGTTGAGGATCTTGCGATGTTTCTAGCTAGAGCAGTGGTGGATGAAGTCTTAGCCCCGCAACACCTTGAAGAGATTGGAACACAGTGTTTGGGGCCAGGTTCAATTGGGAGCAAAGTGCTTCAAATGACAAAGTCATTGCTAAAGGCTAGACTTGCCGGGGAGCGAATCTTGAGGTGTTGGGGTGGTGGGGGGAGTAGCAGGCCTGGATGGGCAGTTGAGGATGTCAAGGACATGATTGGAAAGCTGTTGGAGGAGTATGAGTCTGGAGGCGACATAAGGGAGGCGTGTCGCTGCATGAAAGAGTTAGGAATGCCATTTTTCCATCATGAGGTTGTTAAGAAAGCTTTAGTGACAACCATTGAAAAGAAGAATGAGAGGTTATGGGGTCTACTCAAGGAGTGCTTTGAATCAGGACTAATAACCATGAATCAAATGGCGAAGGGTTTTGGAAGGGTTGCAGAATCTCTTGATGACTTGGCCTTGGATGTCCCTGATGCTAAAAATCAGTTTGAATACTATGTTGAAAGAGCAAAGACTAATGGATGGTTGGACAATTCATTTTGTTTCAGCAAACAGGAACATGCAACAAAGAATGGCACTCACTAA 2187 0.4024 MDFSEGYVSNEHRELHRSATESADPLSVSPLQLSPKSPRSPKSPRSPKSPRSPKSPRSPKVQGKCSNLSPRNHRQSYFQKDGRPKKGGSGGKGTWGGLLDTDDTNVLDPNDPNYDSSEEYDHSNEKKPTTYLEEYKKKVTIIVEEYFATDDVVATMNEVKDLGKPEYGYYFVKKLVSMSMDRHDKEKEMAAILLSALYADIFDPSQVYKGFSKLVQSADDLIVDIPDTVEVLALFIARAVVDDILPPAFLKKQMAYLSKDSKGVEVLKKTAKSYLAAPLHAEIIERCWGGSKSTTVDDVKAKINNFLKEYVVSGDKKEAFRCIKDLKVPFFHHEIVKRALIMAMERRQAESPLLDMLKEAAEEGFINSSQMSKGFGRLIDTVDDLSLDIPNARGILQQLMSKAASEGWLCVSSLKSFSVEPEKNTIEDSAAKSFKVKTQSIIQEYFLSGDISEVNSCLEQANSNNCAALNAIFIKKLITLAMDRKNREKEMASVLLSSLCFPADDVVSGFLMLIESADDTALDNPVVVEDLAMFLARAVVDEVLAPQHLEEIGTQCLGPGSIGSKVLQMTKSLLKARLAGERILRCWGGGGSSRPGWAVEDVKDMIGKLLEEYESGGDIREACRCMKELGMPFFHHEVVKKALVTTIEKKNERLWGLLKECFESGLITMNQMAKGFGRVAESLDDLALDVPDAKNQFEYYVERAKTNGWLDNSFCFSKQEHATKNGTH 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0165 728 Gene3D - 585 717 - -
Ssu9g0165 728 Gene3D - 284 416 - -
Ssu9g0165 728 SUPERFAMILY ARM repeat 598 716 IPR016024 -
Ssu9g0165 728 MobiDBLite consensus disorder prediction 1 20 - -
Ssu9g0165 728 PANTHER PROGRAMMED CELL DEATH 4 1 721 IPR039778 GO:0045892
Ssu9g0165 728 MobiDBLite consensus disorder prediction 55 75 - -
Ssu9g0165 728 ProSiteProfiles MI domain profile. 134 255 IPR003891 -
Ssu9g0165 728 SUPERFAMILY ARM repeat 431 591 IPR016024 -
Ssu9g0165 728 MobiDBLite consensus disorder prediction 22 39 - -
Ssu9g0165 728 SUPERFAMILY ARM repeat 129 292 IPR016024 -
Ssu9g0165 728 MobiDBLite consensus disorder prediction 40 54 - -
Ssu9g0165 728 ProSiteProfiles MI domain profile. 298 419 IPR003891 -
Ssu9g0165 728 SUPERFAMILY ARM repeat 295 415 IPR016024 -
Ssu9g0165 728 SMART ma3_7 299 410 IPR003891 -
Ssu9g0165 728 SMART ma3_7 602 711 IPR003891 -
Ssu9g0165 728 SMART ma3_7 135 246 IPR003891 -
Ssu9g0165 728 SMART ma3_7 434 545 IPR003891 -
Ssu9g0165 728 PANTHER MA3 DOMAIN-CONTAINING PROTEIN 1 721 - -
Ssu9g0165 728 ProSiteProfiles MI domain profile. 433 554 IPR003891 -
Ssu9g0165 728 Pfam MA3 domain 603 711 IPR003891 -
Ssu9g0165 728 Pfam MA3 domain 300 409 IPR003891 -
Ssu9g0165 728 Pfam MA3 domain 136 246 IPR003891 -
Ssu9g0165 728 Pfam MA3 domain 435 544 IPR003891 -
Ssu9g0165 728 ProSiteProfiles MI domain profile. 601 720 IPR003891 -
Ssu9g0165 728 MobiDBLite consensus disorder prediction 1 128 - -
Ssu9g0165 728 Gene3D - 122 276 - -
Ssu9g0165 728 Gene3D - 422 577 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0165 Ssu-Chr9 10706584 10709393 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0165 593 711 Eukaryotic Initiation Factors Gene Family AT5G57870 31.148 3.02e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0165 - - gmx:102668745 1295.8