Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Ssu9g0162 | ATGGCGGCGGCAATTTCTGCTCCAGCGGCGGCTGTTCCGGCAGCGGCATTGAATGGTGCGCAATTCGGGAATGCCTCGCTGTATGTTGGGGATCTTGATGGGAACGTGAATGAGACGCAATTGTTTGATCTGTTTAGCCAAGTGGCCCAAGTGATTTCGATTAGGGTTTGTAGGGATCAGACGAGGCGATCCTCTCTCGGTTATGCTTATGTCAATTTTACCAACGCTCAAGATGCGGCTAATGCCATGGAACATCTGAACTTCACTCCTCTGAATGGAAAGTCCATTCGTATTATGTTTTCTCATCGAGATCCTAGCATTCGAAAAAGCGGATATGCAAATGTGTTTATCAAGAACCTGGACACATCAATAGATAACAAGGCATTACATGATACTTTTGCTGCCTTTGGACCTGTACTTTCCAGTAAGGTAGCTCTTGATAGCAGTGGTCAATCAAAAGGGTATGGATTTGTGCAGTTTGACAACGAAGAGTCCGCACAAAATGCTATCAAACAGTTAAATGGCATgttgataaatgataaaaaagtcTATGTTGGACTCTTTGTTCGGCACCAGGAAAGAGCTCAAGCAAATGGATCACCAAAATTTACCAATAAGCTCTTTAGCACCTATGGTACAATTACTAGTGCTGTGGTCATGAAAGACACAAATGGGAAGTCTAGATGTTTTGGTTTTGTGAATTTCGAAAGTCCAGATTCGGCCGCCACTGCAGTTGAAAGGCTAAATGGAACCACGATCGGTGATGATAAGGTTTTATATGTAGGGAGAGCTCAGAGAAAAGCAGAAAGAGAGGCAGATTTGAAAGCCAAATTTGAGCAGGAAAGAATAAGCAAATATGAGAAATTACTAGGTGCTAATTTATACCTGAAAAACCTTGATGATAGCATCAATGACGAAAAATTGAAGGAGCTATTTTCTGAGTTTGGAACAACAACATCTTGCAagGTGATGCTTGATTCACAAGGGCATAGCAAGGGTTCTGGTTTTGTTGCTTTTTCTACTCCTGAGGAAGCAAGTAAAGCTTTGAATGAAATGAATGGAAAGATGATTGGACAGAAGCCTCTGTATGTTGCTGTGGCCCAGCGCAAAGAAGACAGGAAGGCTCGATTGCAGGCTCAGTTTTCTCAAATGCAAGCTCCAGGTGGAATTGCACCTCTGCCAACAGGAATTCCTGGATATCATCCAGGAGCACCAAGGCTTGCCCCTCAACAATTGTATTTTGGTCAAGGTACACCTGGTCTTGTACCACCTCAGCCAGCGGGATATGGCTTCCAGCAGCAACTCTTGCCAGGCATGCGTCCTGGTGTTGCTCCAAATTTCATCATGCCATACCACCTTCAAAGACAAGGTCTGACTAGTCAAAGGATGGGTGCTCGAAGAGTTGGAAACCTCCAACCGGTGCAGCAGAACCAGATGTTACATCGTAACTCCAACCAAGGGTTTAGATATGTGGGAAACAGTCGAAATGGCATGGATCCATCGGTAGTTCCCCAAGGTCTAATGGGTCCAATGATGCCATTGCCCTTTGATGGCTCAGGAATTGCTGCAGCTCCTAATGATAATCAGCGTACTGGCGCATTGTCTAACACACTTGCCTCAGCTTTGGCTTCTGCTACTCCAGAAAATCAGCGTCTGATGTTGGGTGAACATCTATATCCACTGGTGGACCGACTTACGCCAAATCATCAGACCGCAAGGTGA | 1722 | 0.4448 | MAAAISAPAAAVPAAALNGAQFGNASLYVGDLDGNVNETQLFDLFSQVAQVISIRVCRDQTRRSSLGYAYVNFTNAQDAANAMEHLNFTPLNGKSIRIMFSHRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFGPVLSSKVALDSSGQSKGYGFVQFDNEESAQNAIKQLNGMLINDKKVYVGLFVRHQERAQANGSPKFTNKLFSTYGTITSAVVMKDTNGKSRCFGFVNFESPDSAATAVERLNGTTIGDDKVLYVGRAQRKAEREADLKAKFEQERISKYEKLLGANLYLKNLDDSINDEKLKELFSEFGTTTSCKVMLDSQGHSKGSGFVAFSTPEEASKALNEMNGKMIGQKPLYVAVAQRKEDRKARLQAQFSQMQAPGGIAPLPTGIPGYHPGAPRLAPQQLYFGQGTPGLVPPQPAGYGFQQQLLPGMRPGVAPNFIMPYHLQRQGLTSQRMGARRVGNLQPVQQNQMLHRNSNQGFRYVGNSRNGMDPSVVPQGLMGPMMPLPFDGSGIAAAPNDNQRTGALSNTLASALASATPENQRLMLGEHLYPLVDRLTPNHQTAR | 573 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Ssu9g0162 | 573 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 113 | 190 | IPR000504 | GO:0003723 | |
Ssu9g0162 | 573 | CDD | RRM1_I_PABPs | 26 | 105 | - | - | |
Ssu9g0162 | 573 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 181 | 266 | IPR000504 | GO:0003723 | |
Ssu9g0162 | 573 | Gene3D | - | 202 | 288 | IPR012677 | - | |
Ssu9g0162 | 573 | TIGRFAM | PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family | 25 | 569 | IPR006515 | GO:0003723 | |
Ssu9g0162 | 573 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 292 | 369 | IPR000504 | GO:0003723 | |
Ssu9g0162 | 573 | PANTHER | RNA BINDING PROTEIN | 14 | 572 | - | - | |
Ssu9g0162 | 573 | SMART | rrm1_1 | 114 | 186 | IPR000504 | GO:0003723 | |
Ssu9g0162 | 573 | SMART | rrm1_1 | 293 | 365 | IPR000504 | GO:0003723 | |
Ssu9g0162 | 573 | SMART | rrm1_1 | 187 | 262 | IPR000504 | GO:0003723 | |
Ssu9g0162 | 573 | SMART | rrm1_1 | 26 | 99 | IPR000504 | GO:0003723 | |
Ssu9g0162 | 573 | CDD | RRM2_I_PABPs | 111 | 186 | IPR045305 | - | |
Ssu9g0162 | 573 | SUPERFAMILY | PABC (PABP) domain | 535 | 569 | IPR036053 | GO:0003723 | |
Ssu9g0162 | 573 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 25 | 103 | IPR000504 | GO:0003723 | |
Ssu9g0162 | 573 | SMART | rrm2_1 | 26 | 99 | IPR003954 | GO:0003676 | |
Ssu9g0162 | 573 | SMART | rrm2_1 | 293 | 365 | IPR003954 | GO:0003676 | |
Ssu9g0162 | 573 | SMART | rrm2_1 | 114 | 186 | IPR003954 | GO:0003676 | |
Ssu9g0162 | 573 | ProSiteProfiles | Poly(A)-binding protein C-terminal (PABC) domain profile. | 534 | 573 | IPR002004 | GO:0003723 | |
Ssu9g0162 | 573 | PANTHER | POLYADENYLATE-BINDING PROTEIN | 14 | 572 | - | - | |
Ssu9g0162 | 573 | Coils | Coil | 261 | 281 | - | - | |
Ssu9g0162 | 573 | SUPERFAMILY | RNA-binding domain, RBD | 25 | 192 | IPR035979 | GO:0003676 | |
Ssu9g0162 | 573 | Gene3D | - | 532 | 572 | - | - | |
Ssu9g0162 | 573 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 206 | 257 | IPR000504 | GO:0003723 | |
Ssu9g0162 | 573 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 115 | 183 | IPR000504 | GO:0003723 | |
Ssu9g0162 | 573 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 294 | 362 | IPR000504 | GO:0003723 | |
Ssu9g0162 | 573 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 27 | 97 | IPR000504 | GO:0003723 | |
Ssu9g0162 | 573 | Gene3D | - | 18 | 112 | IPR012677 | - | |
Ssu9g0162 | 573 | SUPERFAMILY | RNA-binding domain, RBD | 206 | 373 | IPR035979 | GO:0003676 | |
Ssu9g0162 | 573 | CDD | RRM4_I_PABPs | 291 | 369 | - | - | |
Ssu9g0162 | 573 | Gene3D | - | 113 | 187 | IPR012677 | - | |
Ssu9g0162 | 573 | Gene3D | - | 291 | 391 | IPR012677 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Ssu9g0162 | Ssu-Chr9 | 10655505 | 10659086 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Ssu9g0162 | 24 | 569 | Eukaryotic Initiation Factors Gene Family | AT1G22760 | 58.362 | 0.0 | 613 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Ssu9g0162 | K13126 | - | gmx:100783163 | 931.398 |