Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0162 ATGGCGGCGGCAATTTCTGCTCCAGCGGCGGCTGTTCCGGCAGCGGCATTGAATGGTGCGCAATTCGGGAATGCCTCGCTGTATGTTGGGGATCTTGATGGGAACGTGAATGAGACGCAATTGTTTGATCTGTTTAGCCAAGTGGCCCAAGTGATTTCGATTAGGGTTTGTAGGGATCAGACGAGGCGATCCTCTCTCGGTTATGCTTATGTCAATTTTACCAACGCTCAAGATGCGGCTAATGCCATGGAACATCTGAACTTCACTCCTCTGAATGGAAAGTCCATTCGTATTATGTTTTCTCATCGAGATCCTAGCATTCGAAAAAGCGGATATGCAAATGTGTTTATCAAGAACCTGGACACATCAATAGATAACAAGGCATTACATGATACTTTTGCTGCCTTTGGACCTGTACTTTCCAGTAAGGTAGCTCTTGATAGCAGTGGTCAATCAAAAGGGTATGGATTTGTGCAGTTTGACAACGAAGAGTCCGCACAAAATGCTATCAAACAGTTAAATGGCATgttgataaatgataaaaaagtcTATGTTGGACTCTTTGTTCGGCACCAGGAAAGAGCTCAAGCAAATGGATCACCAAAATTTACCAATAAGCTCTTTAGCACCTATGGTACAATTACTAGTGCTGTGGTCATGAAAGACACAAATGGGAAGTCTAGATGTTTTGGTTTTGTGAATTTCGAAAGTCCAGATTCGGCCGCCACTGCAGTTGAAAGGCTAAATGGAACCACGATCGGTGATGATAAGGTTTTATATGTAGGGAGAGCTCAGAGAAAAGCAGAAAGAGAGGCAGATTTGAAAGCCAAATTTGAGCAGGAAAGAATAAGCAAATATGAGAAATTACTAGGTGCTAATTTATACCTGAAAAACCTTGATGATAGCATCAATGACGAAAAATTGAAGGAGCTATTTTCTGAGTTTGGAACAACAACATCTTGCAagGTGATGCTTGATTCACAAGGGCATAGCAAGGGTTCTGGTTTTGTTGCTTTTTCTACTCCTGAGGAAGCAAGTAAAGCTTTGAATGAAATGAATGGAAAGATGATTGGACAGAAGCCTCTGTATGTTGCTGTGGCCCAGCGCAAAGAAGACAGGAAGGCTCGATTGCAGGCTCAGTTTTCTCAAATGCAAGCTCCAGGTGGAATTGCACCTCTGCCAACAGGAATTCCTGGATATCATCCAGGAGCACCAAGGCTTGCCCCTCAACAATTGTATTTTGGTCAAGGTACACCTGGTCTTGTACCACCTCAGCCAGCGGGATATGGCTTCCAGCAGCAACTCTTGCCAGGCATGCGTCCTGGTGTTGCTCCAAATTTCATCATGCCATACCACCTTCAAAGACAAGGTCTGACTAGTCAAAGGATGGGTGCTCGAAGAGTTGGAAACCTCCAACCGGTGCAGCAGAACCAGATGTTACATCGTAACTCCAACCAAGGGTTTAGATATGTGGGAAACAGTCGAAATGGCATGGATCCATCGGTAGTTCCCCAAGGTCTAATGGGTCCAATGATGCCATTGCCCTTTGATGGCTCAGGAATTGCTGCAGCTCCTAATGATAATCAGCGTACTGGCGCATTGTCTAACACACTTGCCTCAGCTTTGGCTTCTGCTACTCCAGAAAATCAGCGTCTGATGTTGGGTGAACATCTATATCCACTGGTGGACCGACTTACGCCAAATCATCAGACCGCAAGGTGA 1722 0.4448 MAAAISAPAAAVPAAALNGAQFGNASLYVGDLDGNVNETQLFDLFSQVAQVISIRVCRDQTRRSSLGYAYVNFTNAQDAANAMEHLNFTPLNGKSIRIMFSHRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFGPVLSSKVALDSSGQSKGYGFVQFDNEESAQNAIKQLNGMLINDKKVYVGLFVRHQERAQANGSPKFTNKLFSTYGTITSAVVMKDTNGKSRCFGFVNFESPDSAATAVERLNGTTIGDDKVLYVGRAQRKAEREADLKAKFEQERISKYEKLLGANLYLKNLDDSINDEKLKELFSEFGTTTSCKVMLDSQGHSKGSGFVAFSTPEEASKALNEMNGKMIGQKPLYVAVAQRKEDRKARLQAQFSQMQAPGGIAPLPTGIPGYHPGAPRLAPQQLYFGQGTPGLVPPQPAGYGFQQQLLPGMRPGVAPNFIMPYHLQRQGLTSQRMGARRVGNLQPVQQNQMLHRNSNQGFRYVGNSRNGMDPSVVPQGLMGPMMPLPFDGSGIAAAPNDNQRTGALSNTLASALASATPENQRLMLGEHLYPLVDRLTPNHQTAR 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0162 573 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 113 190 IPR000504 GO:0003723
Ssu9g0162 573 CDD RRM1_I_PABPs 26 105 - -
Ssu9g0162 573 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 181 266 IPR000504 GO:0003723
Ssu9g0162 573 Gene3D - 202 288 IPR012677 -
Ssu9g0162 573 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 25 569 IPR006515 GO:0003723
Ssu9g0162 573 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 292 369 IPR000504 GO:0003723
Ssu9g0162 573 PANTHER RNA BINDING PROTEIN 14 572 - -
Ssu9g0162 573 SMART rrm1_1 114 186 IPR000504 GO:0003723
Ssu9g0162 573 SMART rrm1_1 293 365 IPR000504 GO:0003723
Ssu9g0162 573 SMART rrm1_1 187 262 IPR000504 GO:0003723
Ssu9g0162 573 SMART rrm1_1 26 99 IPR000504 GO:0003723
Ssu9g0162 573 CDD RRM2_I_PABPs 111 186 IPR045305 -
Ssu9g0162 573 SUPERFAMILY PABC (PABP) domain 535 569 IPR036053 GO:0003723
Ssu9g0162 573 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 103 IPR000504 GO:0003723
Ssu9g0162 573 SMART rrm2_1 26 99 IPR003954 GO:0003676
Ssu9g0162 573 SMART rrm2_1 293 365 IPR003954 GO:0003676
Ssu9g0162 573 SMART rrm2_1 114 186 IPR003954 GO:0003676
Ssu9g0162 573 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 534 573 IPR002004 GO:0003723
Ssu9g0162 573 PANTHER POLYADENYLATE-BINDING PROTEIN 14 572 - -
Ssu9g0162 573 Coils Coil 261 281 - -
Ssu9g0162 573 SUPERFAMILY RNA-binding domain, RBD 25 192 IPR035979 GO:0003676
Ssu9g0162 573 Gene3D - 532 572 - -
Ssu9g0162 573 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 206 257 IPR000504 GO:0003723
Ssu9g0162 573 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 115 183 IPR000504 GO:0003723
Ssu9g0162 573 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 294 362 IPR000504 GO:0003723
Ssu9g0162 573 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 27 97 IPR000504 GO:0003723
Ssu9g0162 573 Gene3D - 18 112 IPR012677 -
Ssu9g0162 573 SUPERFAMILY RNA-binding domain, RBD 206 373 IPR035979 GO:0003676
Ssu9g0162 573 CDD RRM4_I_PABPs 291 369 - -
Ssu9g0162 573 Gene3D - 113 187 IPR012677 -
Ssu9g0162 573 Gene3D - 291 391 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0162 Ssu-Chr9 10655505 10659086 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0162 24 569 Eukaryotic Initiation Factors Gene Family AT1G22760 58.362 0.0 613
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0162 K13126 - gmx:100783163 931.398