Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0161 ATGCTGCTGGAAATGGACCAGTCAGAGGTCATCCATCTGATTGAGTCTCCTGAGGACTTGAAGATAAAGGTGTCTGAGGCAATGCAAGTCCTTCATGAAGCTGCATCAGGTTCTGAAGTTGGTGATCAGCTTGGCTCATTGTGGAGGACAGCATTAATCGGAAAAGCTGGTCAACCTGACAATGGCCAGGAACAGGCACCGatgttATAA 210 0.4714 MLLEMDQSEVIHLIESPEDLKIKVSEAMQVLHEAASGSEVGDQLGSLWRTALIGKAGQPDNGQEQAPML 69
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0161 69 SMART poly_2 1 34 IPR002004 GO:0003723
Ssu9g0161 69 Pfam Poly-adenylate binding protein, unique domain 1 31 IPR002004 GO:0003723
Ssu9g0161 69 PANTHER RNA BINDING PROTEIN 1 41 - -
Ssu9g0161 69 Gene3D - 1 45 - -
Ssu9g0161 69 PANTHER POLYADENYLATE-BINDING PROTEIN 1 41 - -
Ssu9g0161 69 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 1 36 IPR002004 GO:0003723
Ssu9g0161 69 SUPERFAMILY PABC (PABP) domain 1 38 IPR036053 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0161 Ssu-Chr9 10654501 10655499 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0161 1 47 Eukaryotic Initiation Factors Gene Family AT4G34110 63.830 9.47e-12 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0161 K13126 - gmx:100783163 77.7962