Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0159 ATGAGGAGAAGAGGCAGAGCGCTTCTTAGCCTCTCTTTTTCTCTGCACTCACAGGTAAACCATTACCCTTTAGCAAAATCAGCACCACCCACTTCTTTCTTTCAAAGCAGTACCACTTTCTCAACCTCTTCCTCTTCCATAACCCCCCCTATCGGAGAACCAAAGGCTTCACCATCCAAATCCCAAAGGGTTTCGCTGATTTTGGAACAGTTCAAGCAAAGGAAACTCAAAGGGTCTCCAAAAGACTCAAAGGGTACCCCCCAAGTGTGTCCAACTTTGGTGCCATTAGGTTCGGATGCTAATACTGAGAAAGTGGTTCAAAAGGGTGTGCAGAATGAGAATGACCCCACCATGGTGGTTGCAAGTTTCAAGGAGTTGGGTGTGAGTGAGGAGCTTGTTGAGGTCATGGAGGGGATTGGGGACCTTGTTCCTAGTGAGATACAGTGTGTGGTTATTCCTGCTATCTTGGAAGGGAAGAGTTTGTTGTTGAGTGCACCATCTGAACCTGACAGAACCTTGGCCTTCTTGTTGCCCCTTATTCAGCTGCTAAGACGGGATAGAGAGTTGCTTGGTTCAAATTCAAAGCATCCGCGAGCCATAGTGCTTTGTGTTACAGAGGAAAAAGCTTCACAGTGCTTTGATGCTGCAAAATATATCATCCATAACGCAGAATTGAAGTCTGCAAAGGATGGTGCTTCACCGGATAACGGGAAGTCACATGGCTCAATTGGCCTCATGATTGGAACTCCTTGTGAGATTCTTCAATACATTGAAGACGGGAGTGTTGTTCCTGCTGAAATAAGATACTTGGTGTTGGATGAGGCGGATTGCATGCTTGATAGTGGCCTTGGTCCTGAAATCCATAAAATTCTCAGACCATTACAAGATCATGAATCAAAATCTTCTGTCAAAAGATTACAAACTATTTTGGCAATTTCAACTATAGCTGAGGTTTTGGGTGAACAATCCCCTGTCGTAAAGCATCTAGAGTGCCATCATGCAGGAAATATTTCTGCAATGTCTTTAGAAATGGAACAAACGGAAGTCTTTCATTTCACAGAGTCTCTTCATTCTCTTAGGAAAAAAGTGGCAGAGGCCATGGACTCCCTTTTGAAACAACAGTAG 1125 0.4427 MRRRGRALLSLSFSLHSQVNHYPLAKSAPPTSFFQSSTTFSTSSSSITPPIGEPKASPSKSQRVSLILEQFKQRKLKGSPKDSKGTPQVCPTLVPLGSDANTEKVVQKGVQNENDPTMVVASFKELGVSEELVEVMEGIGDLVPSEIQCVVIPAILEGKSLLLSAPSEPDRTLAFLLPLIQLLRRDRELLGSNSKHPRAIVLCVTEEKASQCFDAAKYIIHNAELKSAKDGASPDNGKSHGSIGLMIGTPCEILQYIEDGSVVPAEIRYLVLDEADCMLDSGLGPEIHKILRPLQDHESKSSVKRLQTILAISTIAEVLGEQSPVVKHLECHHAGNISAMSLEMEQTEVFHFTESLHSLRKKVAEAMDSLLKQQ 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0159 374 MobiDBLite consensus disorder prediction 33 62 - -
Ssu9g0159 374 MobiDBLite consensus disorder prediction 33 52 - -
Ssu9g0159 374 Pfam DEAD/DEAH box helicase 146 311 IPR011545 GO:0003676|GO:0005524
Ssu9g0159 374 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 152 333 IPR014001 -
Ssu9g0159 374 SMART ultradead3 140 323 IPR014001 -
Ssu9g0159 374 SMART poly_2 311 373 IPR002004 GO:0003723
Ssu9g0159 374 Pfam Poly-adenylate binding protein, unique domain 324 368 IPR002004 GO:0003723
Ssu9g0159 374 SUPERFAMILY PABC (PABP) domain 317 370 IPR036053 GO:0003723
Ssu9g0159 374 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 121 149 IPR014014 GO:0003724
Ssu9g0159 374 Gene3D - 98 320 IPR027417 -
Ssu9g0159 374 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 113 310 IPR027417 -
Ssu9g0159 374 Gene3D - 321 373 - -
Ssu9g0159 374 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 39-LIKE 2 374 - -
Ssu9g0159 374 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 2 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0159 Ssu-Chr9 10602222 10605040 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0159 120 294 Eukaryotic Initiation Factors Gene Family AT3G19760 25.140 5.37e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0159 - - vra:106768009 582.022