Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0156 ATGCTTCTGAGAGGACCCCTCTGTTTTCTGAACCTAAACCCCCAAAACGCCGCATCAATGGCGGGAGCTACCGGAAGAACCCTGTTCACCCTCTCCCTCTCTTCCTCCTCTTCCCTCACGCGCCTCCTCGCCAAGCGCGTCCCACTCTCCAAACCCCTCCCCCTCTTCCCCCGCCTCCGCCCCCTCTGCTCCATCGCCGCCGCGCCGGAAACCGCCGAGGCGAAGCACTCGATGCTCCTCGAGAGGCTCCGAGTCCGACACCTCAGGGACACAGCGAGAATCGCCCCCGAGCCGAGGAAGAAGGCCAAGGGTGCCGAAgcggagagagagagggggaaggagaagaagaaggtgGTTGCGAGCTTCGAGGAGTTGGGAGTGAGTGAGGAGGTCATGGGGGCGGTTAGGGAAATGGGGATTGAGGTACCCACGGAGATACAGGGTATTGGGGTCCCCGCCGTTTTGGAGGGCAACAGTGTCGTTTTGGGGTCTCATACTGGTTCTGGCAAGACCCTCGCTTACTTGCTTCCGCTTGTTCAGTTGCTTAGACGGGATGAACAATTAAATGGAATACTGTTGAAACCCAGGCGTCCCCGAGCTGTTGTACTGTGTCCTACAAGGGAGTTATCTGAGCAGGTTTTCCGAGTTGCAAAGTCGATAAGCCATCATGCACGATTCAGGTGTACCATGGTAAGTGGTGGTGGCCGGCTTAGGCCTCAAGAGGATTCACTTAATAACCCCATCGATATGGTAGTTGGCACCCCTGGCAGGGTTCTTCAACATATTGAGGAGGGAAATATGGTATATGGTGACATCAAATACTTGGTACTGGATGAGGCAGACACAATGTTTGATCGGGGCTTTGGCCCTGATATACGCAAATTTCTGGGTCCATTAAAAAATCGCGCTTCAAAACCTGATGGCCTAGGTTTTCAGACTATCTTGGTAACTGCAACCATGACAAAGGCTGTGCAAAAGCTGATTGATGAGGAGTTTCAAGGCATTGTTCATCTGCGCACGTCAACATTGCATAAAAAGATTTCTTCTGCTCGTCatgattttattaaactttCAGGTTCTGAGAACAAGCTTGAAGCATTACTTCAGGTACTAGAGCCAAGCCTGGCGAAGGGAAACAAGGTGATGGTTTTCTGCAATACATTGGATTCCAGTCGTGCTGTGGATCATTTTCTTGGGGAAAATCAGATTTCTTCTGTGAACTACCATGGGGAGGTACCAGCAGAGCAAAGGGTTGAAAATCTCAGAAAGTTTAAGACTGATAGCGATGATTGTCCTACATTAGTTTGCACGGATTTGGCTGCTAGGGGTCTGGACTTGGATGTGGATCATGTTGTCATGTTTGACTTCCCCTTGAATTCTATTGACTACCTTCATCGCACAGGTAGAACTGCTCGTATGGGTGCAAAAGGGAAGGTAACAAGTTTAGTTGCTAAAAAGGACTTGGACTTGGCCAGCAAAATAGAGGACGCAATGAGGAATAATGAGAGTTTGGAGGCTATCACAAAAGAAAGTGTCCGAAGGGACATTGCAAGGACCCAAATATCTGAGCACAAGGGAAAGAGcaaaaaattggttaaagtTTCAAAAGTTAAGGGCAAATCTGGTAGTCGTGCCAGTTCTGGGAATAATGGGTCAGGTATGAAATCTGGTAAAGGATCACCAGGAAAATCTATGAAGAAAGGGATTAGCGTTTCAAAATCTGGAAAATCTTCTAGTGCAAGTAGTTTGAGAAAAGATTCTTCAGAGAATAAGCAAACACGTAAAATGGTCAGTGCCACCAAATCTGCGAATTCTAAACTGAATGTTGTGGGATTTAGGGGAAAAAATTCATCATCAAATAAGAAAGAATCAGTTTTGTGA 1881 0.4646 MLLRGPLCFLNLNPQNAASMAGATGRTLFTLSLSSSSSLTRLLAKRVPLSKPLPLFPRLRPLCSIAAAPETAEAKHSMLLERLRVRHLRDTARIAPEPRKKAKGAEAERERGKEKKKVVASFEELGVSEEVMGAVREMGIEVPTEIQGIGVPAVLEGNSVVLGSHTGSGKTLAYLLPLVQLLRRDEQLNGILLKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRCTMVSGGGRLRPQEDSLNNPIDMVVGTPGRVLQHIEEGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLGPLKNRASKPDGLGFQTILVTATMTKAVQKLIDEEFQGIVHLRTSTLHKKISSARHDFIKLSGSENKLEALLQVLEPSLAKGNKVMVFCNTLDSSRAVDHFLGENQISSVNYHGEVPAEQRVENLRKFKTDSDDCPTLVCTDLAARGLDLDVDHVVMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDLDLASKIEDAMRNNESLEAITKESVRRDIARTQISEHKGKSKKLVKVSKVKGKSGSRASSGNNGSGMKSGKGSPGKSMKKGISVSKSGKSSSASSLRKDSSENKQTRKMVSATKSANSKLNVVGFRGKNSSSNKKESVL 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0156 626 CDD SF2_C_DEAD 351 483 - -
Ssu9g0156 626 MobiDBLite consensus disorder prediction 540 557 - -
Ssu9g0156 626 Pfam DEAD/DEAH box helicase 144 327 IPR011545 GO:0003676|GO:0005524
Ssu9g0156 626 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 197 493 IPR027417 -
Ssu9g0156 626 SMART helicmild6 392 474 IPR001650 -
Ssu9g0156 626 MobiDBLite consensus disorder prediction 93 113 - -
Ssu9g0156 626 CDD DEADc 131 330 - -
Ssu9g0156 626 Pfam Helicase conserved C-terminal domain 363 474 IPR001650 -
Ssu9g0156 626 Gene3D - 344 550 IPR027417 -
Ssu9g0156 626 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 120 148 IPR014014 GO:0003724
Ssu9g0156 626 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 50 550 - -
Ssu9g0156 626 MobiDBLite consensus disorder prediction 593 626 - -
Ssu9g0156 626 MobiDBLite consensus disorder prediction 519 626 - -
Ssu9g0156 626 Gene3D - 86 339 IPR027417 -
Ssu9g0156 626 MobiDBLite consensus disorder prediction 570 586 - -
Ssu9g0156 626 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 151 338 IPR014001 -
Ssu9g0156 626 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 39 50 550 - -
Ssu9g0156 626 SMART ultradead3 139 358 IPR014001 -
Ssu9g0156 626 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 363 516 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0156 Ssu-Chr9 10554908 10567132 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0156 119 495 Eukaryotic Initiation Factors Gene Family AT3G19760 28.125 5.29e-42 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0156 - - gmx:100805709 912.138