Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0151 ATGGCGGCGGCAATTTCTGCTCCAGCGGCGGCTGTTCCGGCAGCGGCATTGAATGGTGCGCAATTCGGGAATGCCTCGCTGTATGTTGGGGATCTTGATGGGAACGTGAATGAGACGCAATTGTTTGATCTGTTTAGCCAAGTGGCCCAAGTGATTTCGATTAGGGTTTGTAGGGATCAGACGAGGCGATCCTCTCTCGGTTATGCTTATGTCAATTTTACCAACGCTCAAGATGCGGCTAATGCCATGGAACATCTGAACTTCACTCCTCTGAATGGAAAGTCCATTCGTATTATGTTTTCTCATCGAGATCCTAGCATTCGAAAAAGCGGATATGCAAATGTGTTTATCAAGAACCTGGACACATCAATAGATAACAAGGCATTACATGATACTTTTGCTGCCTTTGGACCTGTACTTTCCAGTAAGGTAGCTCTTGATAGCAGTGGTCAATCAAAAGGGTATGGATTTGTGCAGTTTGACAACGAAGAGTCCGCACAAAATGCTATCAAACAGTTAAATGGCATgttgataaatgataaaaaagtcTATGTTGGACTCTTTGTTCGGCACCAGGAAAGAGCTCAAGCAAATGGATCACCAAAATTTACCAATGTCTATGTCAAAAATTTTTCTGAATCATATACTAATGAAGACCTTAAGAAGCTCTTTAGCACCTATGACACAAATGGGAAGTCTAGATGTTTTGGTTTTGTGAATTTCGAAAGTCCAGATTCGGCCGCCACTGCAGTTGAAAGGCTAAATGGAACCACGATCGGTGATGATAAGGTTTTATATGTAGGGAGAGCTCAGAGAAAAGCAGAAAGAGAGGCAGATTTGAAAGCCAAATTTGAGCAGGAAAGAATAAGCAAATATGAGAAATTACTAGGTGCTAATTTATACCTGAAAAACCTTGATGATAGCATCAATGACGAAAAATTGAAGGAGCTATTTTCTGAGTTTGGAACAACAACATCTTGCAagGTGATGCTTGATTCACAAGGGCATAGCAAGGGTTCTGGTTTTGTTGCTTTTTCTACTCCTGAGGAAGCAAGTAAAGCTTTGAATGAAATGAATGGAAAGATGATTGGACAGAAGCCTCTGTATGTTGCTGTGGCCCAGCGCAAAGAAGACAGGAAGGCTCGATTGCAGGCTCAGTTTTCTCAAATGCAAGCTCCAGGTGGAATTGCACCTCTGCCAACAGGAATTCCTGGATATCATCCAGGAGCACCAAGGCTTGCCCCTCAACAATTGTATTTTGGTCAAGGTACACCTGGTCTTGTACCACCTCAGCCAGCGGGATATGGCTTCCAGCAGCAACTCTTGCCAGGCATGCGTCCTGGTGTTGCTCCAAATTTCATCATGCCATACCACCTTCAAAGACAAGGTCTGACTAGTCAAAGGATGGGTGCTCGAAGAGTTGGAAACCTCCAACCGGTGCAGCAGAACCAGATGTTACATCGTAACTCCAACCAAGGGTTTAGATATGTGGGAAACAGTCGAAATGGCATGGATCCATCGGTAGTTCCCCAAGGTCTAATGGGTCCAATGATGCCATTGCCCTTTGATGGCTCAGGAATTGCTGCAGCTCCTAATGATAATCAGCGTACTGGCGCATTGTCTAACACACTTGCCTCAGCTTTGGCTTCTGCTACTCCAGAAAATCAGCGTCTGATGTTGGGTGAACATCTATATCCACTGGTGGACCGACTTACGCCAAATCATCAGACCGCAAAGGTGACAGGAATGCTGCTGGAAATGGACCAGTCAGAGGTCATCCATCTGATTGAGTCTCCTGAGGACTTGAAGATAAAGGTGTCTGAGGCAATGCAAGTCCTTCATGAAGCTGCATCAGGTTCTGAAGTTGGTGATCAGCTTGGCTCATTGTCATTGAATGAATGA 1902 0.4422 MAAAISAPAAAVPAAALNGAQFGNASLYVGDLDGNVNETQLFDLFSQVAQVISIRVCRDQTRRSSLGYAYVNFTNAQDAANAMEHLNFTPLNGKSIRIMFSHRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFGPVLSSKVALDSSGQSKGYGFVQFDNEESAQNAIKQLNGMLINDKKVYVGLFVRHQERAQANGSPKFTNVYVKNFSESYTNEDLKKLFSTYDTNGKSRCFGFVNFESPDSAATAVERLNGTTIGDDKVLYVGRAQRKAEREADLKAKFEQERISKYEKLLGANLYLKNLDDSINDEKLKELFSEFGTTTSCKVMLDSQGHSKGSGFVAFSTPEEASKALNEMNGKMIGQKPLYVAVAQRKEDRKARLQAQFSQMQAPGGIAPLPTGIPGYHPGAPRLAPQQLYFGQGTPGLVPPQPAGYGFQQQLLPGMRPGVAPNFIMPYHLQRQGLTSQRMGARRVGNLQPVQQNQMLHRNSNQGFRYVGNSRNGMDPSVVPQGLMGPMMPLPFDGSGIAAAPNDNQRTGALSNTLASALASATPENQRLMLGEHLYPLVDRLTPNHQTAKVTGMLLEMDQSEVIHLIESPEDLKIKVSEAMQVLHEAASGSEVGDQLGSLSLNE 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0151 633 Gene3D - 538 618 - -
Ssu9g0151 633 CDD RRM1_I_PABPs 26 105 - -
Ssu9g0151 633 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 25 613 IPR006515 GO:0003723
Ssu9g0151 633 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 204 272 IPR000504 GO:0003723
Ssu9g0151 633 Gene3D - 18 113 IPR012677 -
Ssu9g0151 633 PANTHER RNA BINDING PROTEIN 14 621 - -
Ssu9g0151 633 Pfam Poly-adenylate binding protein, unique domain 548 613 IPR002004 GO:0003723
Ssu9g0151 633 SUPERFAMILY PABC (PABP) domain 491 618 IPR036053 GO:0003723
Ssu9g0151 633 PANTHER POLYADENYLATE-BINDING PROTEIN 14 621 - -
Ssu9g0151 633 SMART rrm2_1 26 99 IPR003954 GO:0003676
Ssu9g0151 633 SMART rrm2_1 114 186 IPR003954 GO:0003676
Ssu9g0151 633 SMART rrm2_1 299 371 IPR003954 GO:0003676
Ssu9g0151 633 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 113 190 IPR000504 GO:0003723
Ssu9g0151 633 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 298 375 IPR000504 GO:0003723
Ssu9g0151 633 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 27 97 IPR000504 GO:0003723
Ssu9g0151 633 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 115 183 IPR000504 GO:0003723
Ssu9g0151 633 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 300 368 IPR000504 GO:0003723
Ssu9g0151 633 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 206 263 IPR000504 GO:0003723
Ssu9g0151 633 Coils Coil 267 287 - -
Ssu9g0151 633 SUPERFAMILY RNA-binding domain, RBD 25 191 IPR035979 GO:0003676
Ssu9g0151 633 SUPERFAMILY RNA-binding domain, RBD 196 277 IPR035979 GO:0003676
Ssu9g0151 633 CDD RRM2_I_PABPs 111 186 IPR045305 -
Ssu9g0151 633 CDD RRM4_I_PABPs 297 375 - -
Ssu9g0151 633 Gene3D - 114 187 IPR012677 -
Ssu9g0151 633 Gene3D - 188 292 IPR012677 -
Ssu9g0151 633 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 103 IPR000504 GO:0003723
Ssu9g0151 633 Gene3D - 297 397 IPR012677 -
Ssu9g0151 633 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 540 618 IPR002004 GO:0003723
Ssu9g0151 633 SUPERFAMILY RNA-binding domain, RBD 298 389 IPR035979 GO:0003676
Ssu9g0151 633 SMART rrm1_1 114 186 IPR000504 GO:0003723
Ssu9g0151 633 SMART rrm1_1 26 99 IPR000504 GO:0003723
Ssu9g0151 633 SMART rrm1_1 205 268 IPR000504 GO:0003723
Ssu9g0151 633 SMART rrm1_1 299 371 IPR000504 GO:0003723
Ssu9g0151 633 SMART poly_2 552 616 IPR002004 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0151 Ssu-Chr9 10404932 10408678 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0151 24 627 Eukaryotic Initiation Factors Gene Family AT1G71770 57.006 0.0 669
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0151 K13126 - gmx:100783163 1031.55