Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0149 ATGAGAAGAAGAGGCAGAGAGCTTCTTAGCCTCTCTTTTTCTCTGCACTCACAGGTAAACCATTACCCTTTAGCAAAATCAGCACCACCCACTTCTTTCTTTCAAAGCAGTACCACTTTCTCAACCTCTTCCTCTTCCATAACTCCCCCTATCGAAGAACCAAAGGCTTCACCATCTAAATCCCAAAGGGATTCACTGATTTTGGAACAGTTCAAGCAAAGGAAACTCAAAGGGTCTCCAAAAGACTCAAAGGGTACCCCCCAAGTGTGTTCAACTTCAGTGCCATTAAGTTCGGATGCTAATACTGAGAAAGTGGTTCAAAAGGGTGTGCAGAATGAGAATGACCCCACCATGGTGGTTGCAAGTTTCAAGGAGTTGGGTGTGAGTGAGGAGCTTATTGAGGTCATAGAGGGGATTGGGGACTTTGTTCCTAGTGAGATACAGTGTGTGGTTATTCCTGCTATCTTGGAAGGGAAGAGTGTGTTGTTGAGTGCACCATCTGAACCTGACAGAACCTTGGCCTTCTTGTTGCCCCTTATTCAGCTGCTAAGACGGGATAGAGAGTTGCTTGGTTCAAATTCAAAGCATCCGCGAGCCATAGTGCTTTGTGCTACAGAGGAAAAAGCTTCACAGTGCTTTAATGCTGCAAAATATATCATCCATAACGCAGAATTGAAGTCTGCAAAGGATGGTGCTTCACTGGATAACGGGAAGTCACATGGCTCAATTGGCCTCATGATTGGAACTCCTTGTGAGATTCTTCAATACATTGAAGACGGGAGTGTTGTTCCTGCTGAAATAAGATACTTGGTGTTGGATGAGGCGGATTGCATGCTTGATAGTGGCCTTGGTCCTGAAATCCATAAAATTCTCAGACCATTACAAGATCATGAATCAAAATCTTCTGTCAAAAGATTACAAACTATTTTGGCAATTTCAGCTATAGCTGAGGTTTTGGGCGAACAATCCCCCGTCGTAAAGCATCTAGAGTGCCATCATGCAGGAAATATTTCTGCAATGTCTTTAGAAATGGAACAAACGGAAGTCTTTCATTTCACAGAGTCTCTTCATTCTCTTAGGAAAAAAGTGGCAGAGGCCATGGACTCCCTCTTGAAACAACAGTAG 1125 0.4364 MRRRGRELLSLSFSLHSQVNHYPLAKSAPPTSFFQSSTTFSTSSSSITPPIEEPKASPSKSQRDSLILEQFKQRKLKGSPKDSKGTPQVCSTSVPLSSDANTEKVVQKGVQNENDPTMVVASFKELGVSEELIEVIEGIGDFVPSEIQCVVIPAILEGKSVLLSAPSEPDRTLAFLLPLIQLLRRDRELLGSNSKHPRAIVLCATEEKASQCFNAAKYIIHNAELKSAKDGASLDNGKSHGSIGLMIGTPCEILQYIEDGSVVPAEIRYLVLDEADCMLDSGLGPEIHKILRPLQDHESKSSVKRLQTILAISAIAEVLGEQSPVVKHLECHHAGNISAMSLEMEQTEVFHFTESLHSLRKKVAEAMDSLLKQQ 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0149 374 MobiDBLite consensus disorder prediction 33 52 - -
Ssu9g0149 374 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 295 374 IPR002004 GO:0003723
Ssu9g0149 374 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 152 314 IPR014001 -
Ssu9g0149 374 Gene3D - 316 374 - -
Ssu9g0149 374 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 1 374 - -
Ssu9g0149 374 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 39-LIKE 1 374 - -
Ssu9g0149 374 Gene3D - 93 315 IPR027417 -
Ssu9g0149 374 MobiDBLite consensus disorder prediction 33 102 - -
Ssu9g0149 374 Pfam Poly-adenylate binding protein, unique domain 324 368 IPR002004 GO:0003723
Ssu9g0149 374 SMART poly_2 311 373 IPR002004 GO:0003723
Ssu9g0149 374 Pfam DEAD/DEAH box helicase 146 314 IPR011545 GO:0003676|GO:0005524
Ssu9g0149 374 SMART ultradead3 140 338 IPR014001 -
Ssu9g0149 374 MobiDBLite consensus disorder prediction 67 81 - -
Ssu9g0149 374 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 121 149 IPR014014 GO:0003724
Ssu9g0149 374 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 113 297 IPR027417 -
Ssu9g0149 374 MobiDBLite consensus disorder prediction 84 102 - -
Ssu9g0149 374 SUPERFAMILY PABC (PABP) domain 317 370 IPR036053 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0149 Ssu-Chr9 10364574 10367386 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0149 120 294 Eukaryotic Initiation Factors Gene Family AT3G19760 27.374 8.12e-11 61.2