Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0145 ATGGCAATTGGTAATAGGAACAATGGTGGTGGGTGCGAAAATAGTGTTGGTGGCAACAGTGGCTACCAAGGTGgtagggtggtggtggtggtggaggtagaggtagaggtggtggtggtaataatGGTAGTAATGATGacaaaagcaacaaaaataagGAGGCTGCGTTTGTTTGGCTCGCGAAACTATTCTTCATCCTTCAACATATCCATAATGCTTCTGAAAGGACCCCTCTGTTATCTGAACCTAAACCCCCAAAACGCCGCATCAATGGCGGGAGCTACCGGAAGAACCCTGTTCACCCTCTCCCTCTCTTCCTCCTCTTCCCTCACGCGCCTCCTCGCCAAGCGCGTCCCACTCTCCAAACCCCTCCCCCTCTTCCCCGGCCTCCGCCCCCTCTGCTCCGTCGCCGCCGCGCCGGAAACCGCCGAGGCGAAGCACTCGATGCTCCTCGAGAGGCTCCGAGTCCGACACCTCAGGGACACCGCGAGAATCGCCCCCGAGCCGAGGAAGAAGGCCAAGGGTGCCGAAgcggagagagagagggggaaggagaagaagaaggtgGTTGCGAGCTTCGAGGAGTTGGGAGTGAGTGAGGAGGTCATGGGGGCGGTTAGGGAAATGGGGATTGAGGTACCCACGGAGATACAGGGTATTGGGGTCCCCGCCGTTTTGGAGGGCAACAGTGTCGTTTTGGGGTCTCATACTGGTTCTGGCAAAACCCTCGCTTACTTGCTTCCGCTTGTTCAGTTGCTAAGACGGGATGAACAATTAAATGGAATACTGTTGAAGCCCAGGCGTCCCCGAGCTGTTGTACTGTGTCCTACAAGGGAGTTATCTGAGCAGGTTTTCCGAGTTGCAAAGTCGATAAGCCATCATGCACGATTCAGGTGTACCATGGTAAGTGGTGGTGGCCGGCTTAGGCCTCAAGAGGATTCACTTAATAACCCCATCGATATGGTAGTTGGCACCCCTGGCAGGGTTCTTCAACATATTGAGGAGGGAAATATGGTATATGGTGACATCAAATACTTGGTACTGGATGAGGCAGACACAATGTTTGATCGGGGCTTTGGCCCTGATATACGCAAATTTCTGGGCCCATTAAAAAATCGCGCTTCAAAACCTGATGGCCTAGGTTTTCAGACTATCTTGGTAACTGCAACCATGACAAAGGCTGTGCAAAAGCTGATTGATGAGGAGTTTCAAGGCATTGTTCATCTGCGCACGTCAACATTGCATAAAAAGATTTCTTCTGCTCGTCatgattttattaaactttCAGGTTCTGAGAACAAGCTTGAAGCATTACTTCAGGTACTAGAGCCAAGCCTGGCGAAGGGAAACAAGGTGATGGTTTTCTGCAATACATTGGATTCCAGTCGTGCTGTGGATCATTTTCTTGGGGAAAATCAGATTTCTTCTGTGAACTACCATGGGGAGGTACCAGCAGAGCAAAGGGTTGAAAATCTCAGAAAGTTTAAGACAGATAGCGATGATTGTCCTACATTAGTTTGCACGGATTTGGCTGCTAGGGGTCTGGACTTGGATGTGGATCATGTTGTCATGTTTGACTTCCCCTTGAATTCTATTGACTACCTTCATCGCACAGGTAGAACTGCTCGTATGGGTGCAAAAGGGAAGGTAACAAGTTTAGTTGTTAAAAAGGACTTGGACTTGGCCAGCAAAATAGAGGACGCAATGAGGAATAATGAGAGTTTGGAGGCTATCACAAAAGAAAGTGTCCGAAGGGACATTGCAAGGACCCAAATATCTGAGCACAAGGGAAAGAGcaaaaaattggttaaagtTTCGAAAGTTAAGGGCAAATCTGGTAGTCGTGCCAGTTCTGGGAATAATGGGTCAGGTATGAAATCTGGTAAAGGATCACCAGGAAAATCTATGACGAAAGGGATTAGCGTTTCAAAATCTGGAAAATCTTCTAGTGCAAGTAGTTTGAGAAAAGATTCTTCAGAGAATAAGCAAACACGTAAAATGGTCAGTGCCACCAAATCTGCGAATTCTAAACTCAATGTTGTGGGATTTAGGGGAAAAAATTCATCATCAAATAAGAAAGAATCAGTTTTGTGA 2094 0.4494 MAIGNRNNGGGCENSVGGNSGYQGGRVVVVVEVEVEVVVVIMVVMMTKATKIRRLRLFGSRNYSSSFNISIMLLKGPLCYLNLNPQNAASMAGATGRTLFTLSLSSSSSLTRLLAKRVPLSKPLPLFPGLRPLCSVAAAPETAEAKHSMLLERLRVRHLRDTARIAPEPRKKAKGAEAERERGKEKKKVVASFEELGVSEEVMGAVREMGIEVPTEIQGIGVPAVLEGNSVVLGSHTGSGKTLAYLLPLVQLLRRDEQLNGILLKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRCTMVSGGGRLRPQEDSLNNPIDMVVGTPGRVLQHIEEGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLGPLKNRASKPDGLGFQTILVTATMTKAVQKLIDEEFQGIVHLRTSTLHKKISSARHDFIKLSGSENKLEALLQVLEPSLAKGNKVMVFCNTLDSSRAVDHFLGENQISSVNYHGEVPAEQRVENLRKFKTDSDDCPTLVCTDLAARGLDLDVDHVVMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVVKKDLDLASKIEDAMRNNESLEAITKESVRRDIARTQISEHKGKSKKLVKVSKVKGKSGSRASSGNNGSGMKSGKGSPGKSMTKGISVSKSGKSSSASSLRKDSSENKQTRKMVSATKSANSKLNVVGFRGKNSSSNKKESVL 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0145 697 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 434 587 IPR001650 -
Ssu9g0145 697 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 222 409 IPR014001 -
Ssu9g0145 697 Gene3D - 415 620 IPR027417 -
Ssu9g0145 697 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 223 556 IPR027417 -
Ssu9g0145 697 SMART ultradead3 210 429 IPR014001 -
Ssu9g0145 697 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 39 122 621 - -
Ssu9g0145 697 MobiDBLite consensus disorder prediction 664 697 - -
Ssu9g0145 697 CDD DEADc 202 401 - -
Ssu9g0145 697 Pfam DEAD/DEAH box helicase 215 398 IPR011545 GO:0003676|GO:0005524
Ssu9g0145 697 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 122 621 - -
Ssu9g0145 697 SMART helicmild6 463 545 IPR001650 -
Ssu9g0145 697 CDD SF2_C_DEAD 422 554 - -
Ssu9g0145 697 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 191 219 IPR014014 GO:0003724
Ssu9g0145 697 Pfam Helicase conserved C-terminal domain 434 545 IPR001650 -
Ssu9g0145 697 Gene3D - 157 410 IPR027417 -
Ssu9g0145 697 MobiDBLite consensus disorder prediction 590 697 - -
Ssu9g0145 697 MobiDBLite consensus disorder prediction 611 657 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0145 Ssu-Chr9 10323305 10332581 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0145 190 566 Eukaryotic Initiation Factors Gene Family AT3G19760 28.125 1.66e-41 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0145 - - gmx:100805709 935.25