Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0141 ATGGCTTTTGCAGATGTTGAGTACCGATGCTTCGTTGGTGGGCTTGCTTGGGCCACTGGCAACAATGCTGTTGAGAAAGCATTCTGTCTGTATGGCGATATCATTGAATCAAATATAATCAACGATCATGAGACTAGAAGATCGAGAAGTTTTAGATTTGTGACTTTCGCCCTGGAGCAACTAATGAGAGATGTGATCGAAGGGGATGAATGGTCAGAACCTTGA 225 0.4356 MAFADVEYRCFVGGLAWATGNNAVEKAFCLYGDIIESNIINDHETRRSRSFRFVTFALEQLMRDVIEGDEWSEP 74
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0141 74 PANTHER TRANSFORMER-2-RELATED 1 69 - -
Ssu9g0141 74 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN GRP1A-LIKE 1 69 - -
Ssu9g0141 74 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 67 IPR000504 GO:0003723
Ssu9g0141 74 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 74 IPR000504 GO:0003723
Ssu9g0141 74 SUPERFAMILY RNA-binding domain, RBD 8 67 IPR035979 GO:0003676
Ssu9g0141 74 Gene3D - 2 71 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0141 Ssu-Chr9 10138297 10138799 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0141 11 70 C2H2 Transcription Factor Family AT2G19380 31.667 3.79e-06 40.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0141 - K13195 gmx:100796704 101.293