Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0099 ATGTCCTTGCTAACGGTGGCGCACCAAAGGGGGTCAGGCGAGTTTATCCGGTTCACGGCGGATCACGGCGACGGCGACGGTGATGGTGAACATGGTTATGGACACGATGACGGTGCTGGTGGTGGGGTGTCTCAGTCACTAGGATTCAATTTCAACCAAGTGATGCAACAAGGTGAGGTGACAATGCAAGGTGCTTCTTTGGTTTCAGGATACAACAGGGGTGACCCAGAGTTGAGAGAAATGGTTTCAGCTTTGACACATGTGGTGTCTTCAGGGTCTGGCCAGAGGAGCACCGAATGGGTTCAACAAAGTGGTTTTCCTGTGATGTCAGGTTTTGGACATGCATCTTCTCTTTCACGTTTGTCTTCTttcccttctccttctccttcttctggCCCCTCTTGGGCAGGCCATAAAAGAGGGCGTGAAGAAGAAGAGAGTAGCTCTTCCCATAACTTGATGCAACAACAACCAAGTGCTCCAAGACTCTTCAGAAGCGTTGGTGACCTCATGGTGCCTTCTCAAGGAGACTCATCATCAGTGACTGAAGAACCCCTCACCTCCACAACTACCATCGTACCCGCCGCGGTGGCGGCGGTTACTGAAACCAGTTCAGGAGGTGGGGAGAGGAGGAGAAAGTACAGGGGAGTGAGGCAGAGGCCATGGGGGAAATGGGCAGCAGAAATCCGTGATCCTCACAAAGCAGCAAGAGTTTGGCTTGGCACATTTGACACTGAGGAAGCAGCAGCAAGAGCCTATGATGAAGCTGCATTGAGGTTCAGAGGCAACAGGGCAAAGCTAAACTTCCCTGAAAATGTTAGAACAGTTCCAACTCTTCAACCTTTTCCGGCCACCACAAGACTAACCGTTTCTGATTCCTCCGCCTCTCAATTCCGGCCTCCCACGGCAGCCATGGCGGTGCCACCCTTCATTCAGCCTCCACCAATTCAGAGCTCCTCTGACTTGATCAGGGACTACTTGCAATACTCTCAGCTTCTACAGAGTGACTTTCAACATCAACAccaacaagaacaacaacaacaacaacaacaacctcctagtttgcTTCAGCAGTGGTACTATAATACACAATTGGCTACACTTCAATCTCCTCCATTGTTACCAACATCACCTTCGTTGTCTTCTTCTGTGTCACCAACACCATTCCCCTCATTCTCCACATCTGCTCAATTTTCCTCTGCTTCATTTCCCTTGTTTTCAAGTCAACAAATGGGCTATTTCCAGCCACCGGAAAGCCGCCCTCCTGGCGGCGGGGGGCCGGAGTTACCGCCGTCAACATGGTCGGATACCAGTCGCCATCCACCACCTTCTGGTTGA 1338 0.4865 MSLLTVAHQRGSGEFIRFTADHGDGDGDGEHGYGHDDGAGGGVSQSLGFNFNQVMQQGEVTMQGASLVSGYNRGDPELREMVSALTHVVSSGSGQRSTEWVQQSGFPVMSGFGHASSLSRLSSFPSPSPSSGPSWAGHKRGREEEESSSSHNLMQQQPSAPRLFRSVGDLMVPSQGDSSSVTEEPLTSTTTIVPAAVAAVTETSSGGGERRRKYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTEEAAARAYDEAALRFRGNRAKLNFPENVRTVPTLQPFPATTRLTVSDSSASQFRPPTAAMAVPPFIQPPPIQSSSDLIRDYLQYSQLLQSDFQHQHQQEQQQQQQQPPSLLQQWYYNTQLATLQSPPLLPTSPSLSSSVSPTPFPSFSTSAQFSSASFPLFSSQQMGYFQPPESRPPGGGGPELPPSTWSDTSRHPPPSG 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0099 445 Gene3D AP2/ERF domain 212 272 IPR036955 GO:0003700|GO:0006355
Ssu9g0099 445 MobiDBLite consensus disorder prediction 117 158 - -
Ssu9g0099 445 MobiDBLite consensus disorder prediction 431 445 - -
Ssu9g0099 445 CDD AP2 213 272 IPR001471 GO:0003700|GO:0006355
Ssu9g0099 445 ProSiteProfiles AP2/ERF domain profile. 213 270 IPR001471 GO:0003700|GO:0006355
Ssu9g0099 445 PRINTS Ethylene responsive element binding protein signature 236 252 IPR001471 GO:0003700|GO:0006355
Ssu9g0099 445 PRINTS Ethylene responsive element binding protein signature 214 225 IPR001471 GO:0003700|GO:0006355
Ssu9g0099 445 PANTHER DNA-BINDING DOMAIN 77 410 IPR044808 GO:0003700|GO:0009873
Ssu9g0099 445 Pfam AP2 domain 213 262 IPR001471 GO:0003700|GO:0006355
Ssu9g0099 445 SUPERFAMILY DNA-binding domain 213 271 IPR016177 GO:0003677
Ssu9g0099 445 MobiDBLite consensus disorder prediction 409 445 - -
Ssu9g0099 445 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 77 410 - -
Ssu9g0099 445 MobiDBLite consensus disorder prediction 375 396 - -
Ssu9g0099 445 SMART rav1_2 213 276 IPR001471 GO:0003700|GO:0006355
Ssu9g0099 445 MobiDBLite consensus disorder prediction 117 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0099 Ssu-Chr9 8143418 8145359 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0099 210 286 AP2-EREBP Transcription Factor Family AT2G33710 75.641 5.65e-35 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu9g0099 AP2 3.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0099 - - vun:114180418 512.686