Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0088 ATGGCTGCTTCAACAATGGCTCTttcttcatcatcattgtcCGGCCAAGCAATCAAGCTTGCCCCCTCCACCCCAGAGCTTGCCAATGGAAGGGTTACCATGAGGAAAACCGCCACCAGGACCGTTTCTTCAGGAAGCCCATGGTACGGCCCAGACCGTGTCAAATACTTGGGCCCATTCTCCGGTGAGGCTCCATCCTACCTTACTGGTGAATTCCCAGGTGACTATGGTTGGGACACTGCTGGGCTTTCTGCTGACCCAGAGACATTCGCCAAAAACCGTGAACTTGAGGTCATCCACTGCAGATGGGCCATGTTGGGAGCCCTGGGCTGTGTCTTCCCAGAACTCTTGGCCCGTAATGGTGTCAAGTTCGGCGAGGCCGTGTGGTTCAAGGCTGGGTCTCAGATATTCAGTGAAGGTGGGCTTGACTACTTGGGCAACCCAAACCTGATCCACGCACAAAGCATCCTTGCTATCTGGGCCTCTCAAGTTATCTTGATGGGTGCCGTTGAGGGTTACCGTATTGCTGGTGGGCCTCTCGGTGAGGTGACTGACCCACTCTACCCAGGTGGCAGCTTTGACCCATTGGGCCTTGCTGACGACCCAGAGGCTTTTGCTGAGTTGAAGGTGAAGGAGATCAAGAATGGTAGATTGGCCATGTTCTCCATGTTTGGATTCTTCGTTCAGGCCATTGTGACCGGAAAGGGACCCTTGGAGAACCTGGCTGATCACCTCGCTGACCCAGTGAACAACAATGCTTGGGCTTATGCCACAAACTTTGTGCCTGGAAAGtga 795 0.5283 MAASTMALSSSSLSGQAIKLAPSTPELANGRVTMRKTATRTVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVILMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0088 264 Gene3D Chlorophyll a/b binding protein domain 55 257 - -
Ssu9g0088 264 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 264 IPR001344 GO:0009765|GO:0016020
Ssu9g0088 264 SUPERFAMILY Chlorophyll a-b binding protein 47 261 - -
Ssu9g0088 264 PANTHER CHLOROPHYLL A-B BINDING PROTEIN 2, CHLOROPLASTIC 1 264 - -
Ssu9g0088 264 Pfam Chlorophyll A-B binding protein 64 230 IPR022796 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0088 Ssu-Chr9 7857465 7858259 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0088 1 264 Chloroplast and Mitochondria Gene Families AT2G34430 86.466 5.30e-170 468
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0088 K08912 - ccaj:109815895 505.368