Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0064 ATGTCCTTCCGCAGTATTGTTCGTGATGTAAGGGACGGATTTGGAAGCTTATCAAGGCGGAGTTTTGAGGTAAGGCTTCCTGGCCATAACTGGGGCAAGTCAAATAGTTTGGTCCATGAGGTGCACGAATGCCTGCCAGTAATACAGAATAGCCGGTGGGCTAGCCTTCCACCTGAGCTTCTTCGCGATGTTATTAAAAGATTGGAAGAAAGTGAGAGTACGTGGCCTGCTCGTAAGCATGTGGTTGCATGTGCTGCTGTGTGCAAGTCCTGGAGAGAAATGTGCAAAGAAATTGTTACCAGTCCTGAGTTCTGTGGGAAGATTACTTTCCCTGTCTCCCTGAAGCAGCCTGGTTCAAGGGATGGAACCATCCAGTGTTTCATCAAGAGAGACAAATCTAATCTGACTTACCACCTATTCCTTTGTCTTAGTCCTGCATTGCTAGTTGAAAATGGAAAGTTTCTTCTTTCTGCAAAACGGACCAGAAGAACAACATGCACGGAGTATATTATATCAATGGATGCAGATAACATATCAAGATCTAGTAGCACTTACATTGGAAAACTGAGGTCAAATTTTCTTGGCaccaagtttataatttatgatacaCAGCCCCCTTATAACAATTCTCAGTTGTCTCCTCCAGGCCAAAGCCGTAGGTTTAATTCAAAAAAGGTTTCTCCAAAGGTCCCTAGTGGCAGCTACAATATTGCCCAGATCACCTATGAGTTGAATGTCCTTGGTACCAGGGGCCCGCGCAGGATGAACTGCACAATGCACTCAATCCCCACATCAGCCCTTGGGCCTGGTGGCACCGTCCCGGGCCAGCCAGAGCTCCTTCCCCGCTCCCTCGAAGACTCCTTCCGGAGCATGTCCTTCGCTAGATCCGAGTTTAGCAGCTCTAGGTTCTCGGACATAGTTGTGGCGGGCAATGAAGAGGAGCAGGGAAAGGAGAGGCCTTTAGTTCTCAAGAACAAAGCTCCAAGATGGCATGAGCAGCTGCAGTGTTGGTGCCTTAACTTTAGGGGTAGGGTGACTGTTGCCTCTGTCAAGAATTTTCAGCTGATTGCTGGGACACAGCCACCTGCAACTGGTGCTCCTATGCCATCGTCACAGCCAGCACAGTCTGATCATGACAAGATTATTCTTCAGTTTGGCAAGGTTGGCAAGGATACATTTACTATGGACTATAGATATCCCTTATCTGCATTTCAGGCTTTTGCCATTTGCTTGACTAGCTTCGACACAAAACTGGCTTGTGAATAG 1266 0.4676 MSFRSIVRDVRDGFGSLSRRSFEVRLPGHNWGKSNSLVHEVHECLPVIQNSRWASLPPELLRDVIKRLEESESTWPARKHVVACAAVCKSWREMCKEIVTSPEFCGKITFPVSLKQPGSRDGTIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYIISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYNNSQLSPPGQSRRFNSKKVSPKVPSGSYNIAQITYELNVLGTRGPRRMNCTMHSIPTSALGPGGTVPGQPELLPRSLEDSFRSMSFARSEFSSSRFSDIVVAGNEEEQGKERPLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAGTQPPATGAPMPSSQPAQSDHDKIILQFGKVGKDTFTMDYRYPLSAFQAFAICLTSFDTKLACE 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0064 421 Pfam Tub family 114 416 IPR000007 -
Ssu9g0064 421 ProSitePatterns Tub family signature 1. 341 354 IPR018066 -
Ssu9g0064 421 ProSitePatterns Tub family signature 2. 406 421 IPR018066 -
Ssu9g0064 421 Pfam F-box domain 53 99 IPR001810 GO:0005515
Ssu9g0064 421 Gene3D Tubby Protein; Chain A 110 421 IPR025659 -
Ssu9g0064 421 SUPERFAMILY Tubby C-terminal domain-like 102 421 IPR025659 -
Ssu9g0064 421 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 421 - -
Ssu9g0064 421 Gene3D - 48 100 - -
Ssu9g0064 421 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Ssu9g0064 421 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Ssu9g0064 421 PRINTS Tubby superfamily signature 323 340 IPR000007 -
Ssu9g0064 421 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Ssu9g0064 421 PRINTS Tubby superfamily signature 378 397 IPR000007 -
Ssu9g0064 421 PRINTS Tubby superfamily signature 341 357 IPR000007 -
Ssu9g0064 421 PRINTS Tubby superfamily signature 399 421 IPR000007 -
Ssu9g0064 421 SUPERFAMILY F-box domain 44 97 IPR036047 GO:0005515
Ssu9g0064 421 MobiDBLite consensus disorder prediction 206 228 - -
Ssu9g0064 421 PANTHER TUBBY-RELATED 1 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0064 Ssu-Chr9 6325798 6329042 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0064 1 421 TUB Transcription Factor Family AT1G76900 69.231 0.0 602
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Ssu9g0064 Tub 5.9e-117 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0064 K19600 - gmx:100803729 770.77