Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0060 ATGCAGCTAGGGGACTCAAGTGTGTTGGAGATCTCCTCCCATAACAAGCCCGAGATGGcggtggtggcggcggcggcggcggagcCGGAAGGAGCGGCACGTGACGGCGTCAACGGTGGTGAGATGATTGGGATGGACGTGGATGCAAATTCAGGTGAAGGAAATGAAGGTAATAAGATGGGCTTTGGAGGGAACCGGTGGCCCCGCCAAGAAACTTTGGCTCTCTTGAAGATAAGGTCGGATATGGATGCAGTGTTTCGAGATTCAAGTCTTAAAGGTCCACTTTGGGAAGAAGTTTCaagGAAACTGGCAGGGCTTGGATATCACCGAAGCTCAAAGAAGTGCAAGGAAAAATTTGAGAACGTGTACAAGTACAACAAGAGAACCAAAGAGAACAAAAGTGGAAAATCACATGGAAAAACCTATAAATTCTTTGATCAATTACAAGCCCTTGAGAACAAATTCACAGTCTCTTACCCACCAAAGCCACAACCTACTTTGGCAACAACAAACACAGATCATGTTAACAAAGTTATCTCTTATGTCACACCTTTTCCTTCCATAAACCCTACACTCATTTCTCCTTCACCACAaaccaacaccaccaccaccaccaccaccacatcCACAACCAACCCTAGAGACCCAACACCAccacaaaacaacaacaatattaataatgtgCCATATTCATTGCCAAACATGAACACCCCTTTCTCAACCACCACCTCTTCCTCCACAGCATCAGATGAAGACTTAGAAGAGAGGTATAGGAGGAAGAGAAAGTGGAAGGACTACTTCAGGAGGCTCACTAGGAAGGTCCTTCTGAAGCAAGAGGAAATGCAAAAGAAGTTCTTGGAAGCCGTGGACAAAAGGGAGAGGGAAAGGGTGGCACAACAAGACAATTGGAGGATGCAAGAAATGGCCAGAATTAATAGGGAACATGAGATTCTTGTTCAAGAGAGATCAACAGCAGCAGCCAAAGATGCTGCAGTCATTGCATTATTGCAAAAGCTGTGTGGCCAGCAAAACCCCACAATACAACAAGTAGAAGTAGAACCACCACAACAGAAGCAAACAACGCCACAAACACAGCCTCCAATATTAATGCCAAACAATGGTTTCGAGGTCAAGAAGATGAATAATGGTCACAGTGCTATTAGTACTACTACTGCTGTTGCTGCTACTACTACTTCTCCTGTGAGCTCTTCTTCTTCTAGGTGGCCAAAGGCTGAAATTCATGCTTTGATAAGGTTAAGGACAAGTCTTGAAACCAGATATCAAGAAAATGGACCAAAAGCTCCATTGTGGGAAGATATATCAATTGCAATGCAGAGGCTTGGGTACAATCGGAGTGCAAAGAGGTGCAAAGAAAAATGGGAGAACATCAACAAGTACTTCAAGAAAGTGAGGGAGAATAACAAAGAAAGGCGTGAAAATAGCAAGACATGCCCCTATTTTCACGAGCTCGATGCTCTATACAAAGAAAAGAGCAAATCCCAGAACCCCTTTGGCATGTTCCAGAATATGAAGCCAAatgagatgatgatgatgatggagcCACTGATGGTGCAACCGGAGCAACAATGGAGGCCTCCACCTCAATCATTGGAAGAGGGTATAGGGAAGGAGAATGCAAGTGAATatcaagaaaaggaagaagaagaagaagaagaaaatggtgatgatgatggtgtTGAAGAAGATGGAGATAGTGTGGACGATAAAGGAGCAAGCCGGTATGAGATTgcgacaaataattaa 1764 0.3968 MQLGDSSVLEISSHNKPEMAVVAAAAAEPEGAARDGVNGGEMIGMDVDANSGEGNEGNKMGFGGNRWPRQETLALLKIRSDMDAVFRDSSLKGPLWEEVSRKLAGLGYHRSSKKCKEKFENVYKYNKRTKENKSGKSHGKTYKFFDQLQALENKFTVSYPPKPQPTLATTNTDHVNKVISYVTPFPSINPTLISPSPQTNTTTTTTTTSTTNPRDPTPPQNNNNINNVPYSLPNMNTPFSTTTSSSTASDEDLEERYRRKRKWKDYFRRLTRKVLLKQEEMQKKFLEAVDKRERERVAQQDNWRMQEMARINREHEILVQERSTAAAKDAAVIALLQKLCGQQNPTIQQVEVEPPQQKQTTPQTQPPILMPNNGFEVKKMNNGHSAISTTTAVAATTTSPVSSSSSRWPKAEIHALIRLRTSLETRYQENGPKAPLWEDISIAMQRLGYNRSAKRCKEKWENINKYFKKVRENNKERRENSKTCPYFHELDALYKEKSKSQNPFGMFQNMKPNEMMMMMEPLMVQPEQQWRPPPQSLEEGIGKENASEYQEKEEEEEEENGDDDGVEEDGDSVDDKGASRYEIATNN 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0060 587 MobiDBLite consensus disorder prediction 190 256 - -
Ssu9g0060 587 ProSiteProfiles Myb-like domain profile. 65 123 IPR001005 -
Ssu9g0060 587 PANTHER - 1 583 - -
Ssu9g0060 587 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-2 1 583 - -
Ssu9g0060 587 SMART sant 404 466 IPR001005 -
Ssu9g0060 587 SMART sant 63 125 IPR001005 -
Ssu9g0060 587 MobiDBLite consensus disorder prediction 190 248 - -
Ssu9g0060 587 CDD GT1 65 130 - -
Ssu9g0060 587 Pfam Myb/SANT-like DNA-binding domain 406 493 IPR044822 -
Ssu9g0060 587 Pfam Myb/SANT-like DNA-binding domain 65 151 IPR044822 -
Ssu9g0060 587 ProSiteProfiles Myb-like domain profile. 406 464 IPR001005 -
Ssu9g0060 587 MobiDBLite consensus disorder prediction 527 587 - -
Ssu9g0060 587 CDD GT1 407 471 - -
Ssu9g0060 587 MobiDBLite consensus disorder prediction 550 571 - -
Ssu9g0060 587 Gene3D - 408 469 - -
Ssu9g0060 587 Gene3D - 67 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0060 Ssu-Chr9 6096758 6099290 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0060 61 530 Trihelix Transcription Factor Family AT1G76880 50.595 3.65e-138 413
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Ssu9g0060 Myb_DNA-bind_4 1.5e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0060 - - gmx:100807507 856.67