Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0059 ATGCTGGGGGACTCAGCAGTGTTGGGAAcaggaggaggaggaggctCTGGAGATGCAGTGGCAGCAGTTGCTGCTGCATCATCAGGAGGAGCTCATGACGGTGCTGGCGTGGCAGGCGGTGGTGGCGGCGGAGGATCGAATTCAGGGGATGATGAGAGGGGTAGAGTTGAGGAAGGTGACAAGAGCTTCGGTGGCAGCAGGTGGCCAAGGCAAGAGACTCTGGCTTTGTTGAAGATACGGTCAGATATGGACGTGGCTTTTAGAGATGCAAGTGTAAAGGGTCCCTTGTGGGAAGAGGTTTCTAGTTACCCACTCTTGGTGGGAAGGAATGAAGGTAGATTGCACAATCTTCTCACTTGGGTTCATGTGTTTTCCATGGGAAGCATTTCCGTTTCACCGATTCATgCTCTTCAGTTACTCCCTTTCCCCTCCATTTCCGTTCATGGGAAGCTGGCAGAGCTTGGCTACCACAGAAATGCCAAGAAGTGCAAAGAGAAATTCGAGAACGTTTACAAGTACCACAAGAGAACCAAGGAAGGGCGAGGTGGGAAATCAGAAGGCAAAACTTATCGCTTCTTTGATCAGTTAGAAGCCCTTGAGAACAACCCTGCAATCCAATCCCCAACACCACTTTCAAAGCCTCCACCACAAACAACACCACTAGCAGCAACACCAGTGTCAATAGTGGTAACAACTACATCATCAATAATGCCAATTCCCCCAACCACAACAGTGTCATTGCCACCAGTTTCCAACGCCACTGTTCCATCAACAACTACACTCCCCATGCCTCAAGGCATTCTCAACATATCACCACCGTCAACACTAAACATCACAACCCCTTCCTACCCATCATCAAACCCTACATATTTTCCAACACAAACAACAAACCCTACTAATAGCAACCCCCCAAATGCCGTTGCCCCACCTTCATTCCCCAACATCCCAACCGATCTCTTGTCGAATTCTAGTTCTTCCTCGACTTCCTCTGAGGGAACAATGGAGGGAGGGGGAGCGAGGCgcaagaggaagaggaagtgGAAGGACTTCTTTGAGAGACTCATGAAGGAAGTGATAGAGAAGCAGGAGGAGCTGCAAAGGAGGTTCTTGGAAGCCATAGAGAAAAGAGAGCAAGAGCGAGTGGCGAGAGAAGAAGCATGGAGGATGCAAGAGATGCAAAGGATCAACAGGGAAAGGGAGATTCTAGCACAAGAGAGGTCCATTGCTGCAGCAAAAGACGCAGCTGTTATGGCATTTTTGCAAAAGATAGCccaacagcaacaacaagaaATTAATCTTGAGCCAGCAttgaataacaacaacaacaacaacaacatcaccaGTGTTCCACCAGTGCCACAAGCAACACCAACACCACAACAAGCACAAACAACAACGGTTCCTGAGGCCCCACCGGTGCAGCCCTTGGccccacaaccacaaccacaatcacaaccacaacaacaacatcaggtgcagcaacaacaacaagtgGTGCCTAATGTGGAAATCAATAAAGCTGATAATAACGGTGAGAATTTGATGATGGGAGCGAGCTCTTCAAGGTGGCCAAAAGTGGAGGTACAAGCACTGATAAATCTGAGGACGAGCCTGGAAACAAAGTACCAGGAAAGTGGACCAAAAGGGCCACTGTGGGAGGAGATCTCAGCGTTGATGAGGAAAATGGGGTACAACCGGAATGCCAAAAGGTGCAAAGAGAAGTGGGAGAACATCAACAAGTACTTCAAGAAAGTCAAGGAAAGCAACAAGAGGAGGCCCGAAGATTCCAAGACCTGTCCTTATTTTCACCAGTTGGAAGCTCTATATAGGGAGAAGAACAAGGCAGAGGGCCAAATGAAGCCGGAGAGCATGATGGCGCCGCTCATGGTGCAGCCGGAGCAACAATGGCCTCCCCAGCACGTGGTGCCGCCAGAAGTGACCATGGGAGACGCCCAGAATGACCCCATGGACCGACAGCACCACGAGGAGGATGAAGACGAGGAGGATGACAAGGAAATTGGAGATGAAGatgaggatgatgatgatgatgatgatgaaggagGTGGTAATTATGAGATAGTAGCGAGCAAGCCAGCTTCTGCTAAGTGA 2109 0.4533 MLGDSAVLGTGGGGGSGDAVAAVAAASSGGAHDGAGVAGGGGGGGSNSGDDERGRVEEGDKSFGGSRWPRQETLALLKIRSDMDVAFRDASVKGPLWEEVSSYPLLVGRNEGRLHNLLTWVHVFSMGSISVSPIHALQLLPFPSISVHGKLAELGYHRNAKKCKEKFENVYKYHKRTKEGRGGKSEGKTYRFFDQLEALENNPAIQSPTPLSKPPPQTTPLAATPVSIVVTTTSSIMPIPPTTTVSLPPVSNATVPSTTTLPMPQGILNISPPSTLNITTPSYPSSNPTYFPTQTTNPTNSNPPNAVAPPSFPNIPTDLLSNSSSSSTSSEGTMEGGGARRKRKRKWKDFFERLMKEVIEKQEELQRRFLEAIEKREQERVAREEAWRMQEMQRINREREILAQERSIAAAKDAAVMAFLQKIAQQQQQEINLEPALNNNNNNNNITSVPPVPQATPTPQQAQTTTVPEAPPVQPLAPQPQPQSQPQQQHQVQQQQQVVPNVEINKADNNGENLMMGASSSRWPKVEVQALINLRTSLETKYQESGPKGPLWEEISALMRKMGYNRNAKRCKEKWENINKYFKKVKESNKRRPEDSKTCPYFHQLEALYREKNKAEGQMKPESMMAPLMVQPEQQWPPQHVVPPEVTMGDAQNDPMDRQHHEEDEDEEDDKEIGDEDEDDDDDDDEGGGNYEIVASKPASAK 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0059 702 MobiDBLite consensus disorder prediction 483 497 - -
Ssu9g0059 702 MobiDBLite consensus disorder prediction 50 65 - -
Ssu9g0059 702 MobiDBLite consensus disorder prediction 436 451 - -
Ssu9g0059 702 Gene3D - 523 584 - -
Ssu9g0059 702 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 101 - -
Ssu9g0059 702 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 147 697 - -
Ssu9g0059 702 MobiDBLite consensus disorder prediction 315 334 - -
Ssu9g0059 702 PANTHER - 1 101 - -
Ssu9g0059 702 ProSiteProfiles Myb-like domain profile. 521 579 IPR001005 -
Ssu9g0059 702 Coils Coil 348 379 - -
Ssu9g0059 702 MobiDBLite consensus disorder prediction 629 702 - -
Ssu9g0059 702 Pfam Myb/SANT-like DNA-binding domain 521 608 IPR044822 -
Ssu9g0059 702 Pfam Myb/SANT-like DNA-binding domain 147 199 IPR044822 -
Ssu9g0059 702 MobiDBLite consensus disorder prediction 282 344 - -
Ssu9g0059 702 CDD GT1 66 178 - -
Ssu9g0059 702 MobiDBLite consensus disorder prediction 661 689 - -
Ssu9g0059 702 MobiDBLite consensus disorder prediction 282 302 - -
Ssu9g0059 702 Gene3D - 68 176 - -
Ssu9g0059 702 SMART sant 519 581 IPR001005 -
Ssu9g0059 702 MobiDBLite consensus disorder prediction 436 497 - -
Ssu9g0059 702 MobiDBLite consensus disorder prediction 29 67 - -
Ssu9g0059 702 PANTHER - 147 697 - -
Ssu9g0059 702 CDD GT1 521 586 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0059 Ssu-Chr9 6046337 6049200 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0059 64 635 Trihelix Transcription Factor Family AT1G76890 42.809 2.13e-132 401
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Ssu9g0059 Myb_DNA-bind_4 1.2e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0059 - - gmx:100804788 769.615