Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0058 ATGGAAGGGAATTTGTCACAGGGCGGTATGCTTCGAGGTGGGGGTTCGTTTGGTGGTTTTGATTTACCTGGATCAATGCGGGTTCATCGGCAAGCGCAGCATCCTCATTCCATGAACCAGCATCAGACTCATCCTTGCCAAGGGTCTTCAGTGCATTCCTCAGTTCATGATGGTTTTCCTCTTACAATGGGAACCTTGCAGAACTGTGATCAGACAATGTCAATGACCGAGTTTAGTCAGGGAGATAGAAACAAAAACTCGCCAAGTGAGGAAGATGAGCCAAGTTTTGCTGAGGAAGGTGTTGATGGCCATCATGAAGCAGGTCGAGGGAAAAAGGGGTCACCTTGGCAGCGGGTGAAGTGGACTGACAAGATGGTGAGGCTTTTGATAACAGCTGTTTCTTACATAGGCGAGGATGCAACTTCTGACGGTGGCGGCGGAAGGAGAAAATTTACAGTCCTACAGAAAAAGGGGAAGTGGAAATCTGTTTCCAAGGTCATGGCTGAAAGGTGTTATCATGTTTCACCTCAGCAGTGTGAGGATAAATTCAATGATCTTAATAAAAGGTACAAAAAGCTTAATGATATGCTTGGGAGGGGAACTTCTTGTCAGGTTGTTGAACATCCTGCTCTGTTGGAGGTGATAGATTATCTTTCtgagaaagaaaaggatgaCGTTCGAAAAATCTTGAGCTCAAAACACCTGTTCTATGAAGAGATGTGTTCTTACCATAATGGTAATAGATTGCATTTACCCCATGATCCTGCATTGCAACGATCGCTGCAGTTGGCTCTCCGAAATAGAGATGATCATGATAATGATGATATCAGAAGGTCCTATCACGATgatcatgatgatgatgatctaGATGCGGAAACTGATGATCATGATGACTTTGAAGAGAATTATGCTTCCCATGCAGATAGTAGAGGAATCTATGGGGCAGCAGGGGGACCTTTGAAGAGATCAAAACTGGGGCATGGGCAAGAAGATGCTGCCACTTTTGGGAGTGCTTTAAGCAGTCAAGAGTACAACAAAAGTTCATATCCTCAGATGGTCCAATCTGATGTGAATCAAGCTTTACCTGAAAACATGAGAGCAGCTTGGTTACAGAAGCAATGGGTTGGATCTCGTTCACTTCAGTTGGAAGAGCAGAAGCTACAAATTCAGGTCGAGATGTTGGAGCTAGAGAAACAAAGATTCAAGTGGCAGAAGTTTAGCAAGAAAAAAGACCGAGAGTTGGAAAAGTTGAAGCTGGAGAATGAAAGAATGAAGCTTGAGAATGAACGTATTGCTTTAGAACTAAAGCGAAAGGAAATGGCCACCGGCTTTAACTAG 1338 0.4283 MEGNLSQGGMLRGGGSFGGFDLPGSMRVHRQAQHPHSMNQHQTHPCQGSSVHSSVHDGFPLTMGTLQNCDQTMSMTEFSQGDRNKNSPSEEDEPSFAEEGVDGHHEAGRGKKGSPWQRVKWTDKMVRLLITAVSYIGEDATSDGGGGRRKFTVLQKKGKWKSVSKVMAERCYHVSPQQCEDKFNDLNKRYKKLNDMLGRGTSCQVVEHPALLEVIDYLSEKEKDDVRKILSSKHLFYEEMCSYHNGNRLHLPHDPALQRSLQLALRNRDDHDNDDIRRSYHDDHDDDDLDAETDDHDDFEENYASHADSRGIYGAAGGPLKRSKLGHGQEDAATFGSALSSQEYNKSSYPQMVQSDVNQALPENMRAAWLQKQWVGSRSLQLEEQKLQIQVEMLELEKQRFKWQKFSKKKDRELEKLKLENERMKLENERIALELKRKEMATGFN 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0058 445 MobiDBLite consensus disorder prediction 84 116 - -
Ssu9g0058 445 MobiDBLite consensus disorder prediction 1 25 - -
Ssu9g0058 445 MobiDBLite consensus disorder prediction 77 116 - -
Ssu9g0058 445 Coils Coil 407 441 - -
Ssu9g0058 445 Coils Coil 377 399 - -
Ssu9g0058 445 PANTHER FACTOR, PUTATIVE-RELATED 1 445 - -
Ssu9g0058 445 Gene3D - 121 192 - -
Ssu9g0058 445 MobiDBLite consensus disorder prediction 271 296 - -
Ssu9g0058 445 Pfam Myb/SANT-like DNA-binding domain 118 243 IPR044822 -
Ssu9g0058 445 MobiDBLite consensus disorder prediction 271 285 - -
Ssu9g0058 445 PANTHER F16F4.11 PROTEIN-RELATED 1 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0058 Ssu-Chr9 5962156 5963493 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Ssu9g0058 Myb_DNA-bind_4 3.5e-23 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0058 - - pvu:PHAVU_007G079600g 677.552