Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0048 atGGACCCGAAGTTCATCGGAAAGCCGCCGGCGACGGTGGACCTCGACCGGATGCCGGAGCGCGGGTCCCACCACCGGCGCTCGCACTCCGACACCTCGTTCCGCTTCGCCGCGAACTTCGACGACCTCCTCCTCTTCGACGCCTCCGACCTCGACATCTCCGGCCTCCCCTCGCCGCTCCCGCTGCCGTCGCCGGCCTCCGCCGGCGTCGTGCCGATGGCCGTCGACTCGGACGAGTCCGGCGGGCGGCCGAGGCCCGCGGGGGCGTCCGCCGGCGGGCACGTCCGGAGCCTGTCGGTGGACTCCGACTTCTTCGACGGGCTCGGGCTCGGCGGTGGCGGCGACGAGAGGGGCGCCGGGAAGGGCGGCGGCGAGCGGAGGGCGGGGCACCACCGGCACAGCAACTCGATGGACGGGTCGTCGACGACGTCGTTTGAGGCGGACTCGGCGATGATGATGGATGGCGTGAAGAAAGCTATGGCTCCTGATAAACTCGCTGAGCTTGCTCTTATTGATCCCAGGAGAGCTAAGAGGATTCTTGCTAACAGGCAATCTGCTGCTAGATCAAAGGAGAGGAAGATTCGTTACACAAGTGAGCTGGAGAGGAAGGTGCAGACGCTTCAGACTGAAGCAACTAACCTTTCTGCACAGCTTACAATGCTTCAGAGAGACACTACAGATTTGACCGCAGAGAATAAGGAGCTCAAACTGCGTTTAGAGGCTTTGGAGCAAGAAGCACAGCTTAGAGAAGATCTCAATGAGGCATTGAAGGAAGAACTGCAGCGCCTTAGGGCACAAAGTAGTCGTTTGGGTGCTATTGCCGGTAACCCTTCTTTTGGTGGGTTATTCAACCAGTTGGCTTCCCAATTAGCCATGCAACAGTTGTCTAATTCTGCACCCCAGCAGGCACAACACCAGCCACAGGTTGGCTTGCCTCCTCCTCCCTCTGGACAGAACCACCCTAACTTCATGGACTTCAATCAGCAGAAGTAG 993 0.6012 MDPKFIGKPPATVDLDRMPERGSHHRRSHSDTSFRFAANFDDLLLFDASDLDISGLPSPLPLPSPASAGVVPMAVDSDESGGRPRPAGASAGGHVRSLSVDSDFFDGLGLGGGGDERGAGKGGGERRAGHHRHSNSMDGSSTTSFEADSAMMMDGVKKAMAPDKLAELALIDPRRAKRILANRQSAARSKERKIRYTSELERKVQTLQTEATNLSAQLTMLQRDTTDLTAENKELKLRLEALEQEAQLREDLNEALKEELQRLRAQSSRLGAIAGNPSFGGLFNQLASQLAMQQLSNSAPQQAQHQPQVGLPPPPSGQNHPNFMDFNQQK 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0048 330 SMART brlzneu 170 234 IPR004827 GO:0003700|GO:0006355
Ssu9g0048 330 Coils Coil 197 273 - -
Ssu9g0048 330 MobiDBLite consensus disorder prediction 14 32 - -
Ssu9g0048 330 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 172 235 IPR004827 GO:0003700|GO:0006355
Ssu9g0048 330 MobiDBLite consensus disorder prediction 67 95 - -
Ssu9g0048 330 MobiDBLite consensus disorder prediction 109 144 - -
Ssu9g0048 330 CDD bZIP_plant_RF2 175 224 IPR044759 GO:0003700|GO:0006355
Ssu9g0048 330 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 10 327 - -
Ssu9g0048 330 Gene3D - 173 245 - -
Ssu9g0048 330 MobiDBLite consensus disorder prediction 293 330 - -
Ssu9g0048 330 MobiDBLite consensus disorder prediction 1 32 - -
Ssu9g0048 330 PANTHER BASIC-LEUCINE ZIPPER (BZIP) TRANSCRIPTION FACTOR FAMILY PROTEIN-RELATED 10 327 - -
Ssu9g0048 330 Pfam bZIP transcription factor 174 232 IPR004827 GO:0003700|GO:0006355
Ssu9g0048 330 MobiDBLite consensus disorder prediction 119 134 - -
Ssu9g0048 330 SUPERFAMILY Leucine zipper domain 174 226 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0048 Ssu-Chr9 5100099 5105421 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0048 9 329 bZIP Transcription Factor Family AT1G43700 48.138 2.13e-80 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Ssu9g0048 bZIP_1 1.9e-07 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0048 K20557 - gmx:778142 495.738