Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0034 ATGGCAAAGGTAAGGGAGAAGCTATACGTCACCGTTCCAAGTCTCTTTCGGTGCCCAATCTCCATGGACGTGATGCGGTCCCCCGTAAGCCTCTGCACCGGCGTCACATACGATCGCTCCAGCATTCAGCACTGGCTCGACTCAGGACACGACACGTGTCCCGCCACGATGCAGGTTCTTCCCTCCAAAGACTTCATTCCCAACCTCACCGTCCACCGCCTCATCCGCCTCTGGCTCCTTTCCTCCGAACCTCCCTCGCCGCCCGTCGCCGACCGCCTCCGCTCCCTCCTCCGCGGCGTCCAATCCGCCGACGAAGACCTCGCCGGAGCCCTCTCCAAAATCGCCGAATTCGCCAAATCCTCCGCCGAGAACCGCCGCTTGCTCGCCGCGTTCAACGGCTTCGACTCCGCCGTGGTCCGCGCGCTCGCCGGAAGCGCTGCGTCGGAAAACGCGATCTACCTTCTCGATTCCGTTTTCCGCCAAAACGGAAATTCCGAGAGAATCCGAAAGCTGATTCTCGACGCTCGCGAACAGTGCTTTTATTCGATGATTTCCGTTCTGAGAAACGGATCTCCGAAATCGAAGGTTGAAACGGTTAGGGTTTTGGAGTTTCTCGCTTGCGATTTCGGATCGAAGAAATTGATTGCCGAAACGCGCGGATTGATGTCGTTGCTCACGAGTTTTTTAAAGGACAGTGAAGAGGAGTTAAACGACGCCGTTTTGTCGTTGCTCGGCGTCGTTTCGGTGACTCATTCCGCGAAGGTGGAACTCGTTAATTGCGGAGTCGTCGAGGCGGTCTCGGAGTTGTTGCGCGCGCGTTCGGCGGCGGCGACGTCGGAGAGGTGTCTGAGGGTGCTGGCGGTGGTGGCGACGTGCGCGGAGGGGCGGGCGGCGATGGCAGCGGAGCCTTCGTGCGCCGCGGCGGTGGTGGAGCGGGTGGCGAAGGCGCCGAAGGCCGCGGCGGAGGACGCGGTGGCGGTGCTGTGGAGCCTCTGCTGTTTGTGCGGTAATGTGAAAGTGAGGGATGACGTGGCAAAGCGAAACGGCGTCGCGGCGATTTTGTTGGTTATGCAGAGAGGGTGGGAGGAGCACGTGAGGAGCATGTGCGTGGATTTGATTAAGGTTTTGAAGGGTGCGTGTAAGAACGGGTTAGGGTTGGAACTAGGAAGCTATGACACCAAAACCACTCATATCAAACCTTGCTAA 1206 0.5896 MAKVREKLYVTVPSLFRCPISMDVMRSPVSLCTGVTYDRSSIQHWLDSGHDTCPATMQVLPSKDFIPNLTVHRLIRLWLLSSEPPSPPVADRLRSLLRGVQSADEDLAGALSKIAEFAKSSAENRRLLAAFNGFDSAVVRALAGSAASENAIYLLDSVFRQNGNSERIRKLILDAREQCFYSMISVLRNGSPKSKVETVRVLEFLACDFGSKKLIAETRGLMSLLTSFLKDSEEELNDAVLSLLGVVSVTHSAKVELVNCGVVEAVSELLRARSAAATSERCLRVLAVVATCAEGRAAMAAEPSCAAAVVERVAKAPKAAAEDAVAVLWSLCCLCGNVKVRDDVAKRNGVAAILLVMQRGWEEHVRSMCVDLIKVLKGACKNGLGLELGSYDTKTTHIKPC 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0034 401 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 6 401 - -
Ssu9g0034 401 Pfam U-box domain 12 81 IPR003613 GO:0004842|GO:0016567
Ssu9g0034 401 Gene3D - 78 382 IPR011989 -
Ssu9g0034 401 SMART Ubox_2 15 78 IPR003613 GO:0004842|GO:0016567
Ssu9g0034 401 ProSiteProfiles U-box domain profile. 11 85 IPR003613 GO:0004842|GO:0016567
Ssu9g0034 401 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 77 IPR013083 -
Ssu9g0034 401 SUPERFAMILY ARM repeat 107 371 IPR016024 -
Ssu9g0034 401 CDD RING-Ubox_PUB 16 58 IPR045210 -
Ssu9g0034 401 SUPERFAMILY RING/U-box 8 81 - -
Ssu9g0034 401 PANTHER WDSAM1 PROTEIN 6 401 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0034 Ssu-Chr9 4646058 4647263 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0034 6 400 U-box Gene Family AT5G09800 38.647 3.03e-82 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0034 - - gmx:100786235 594.349