Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0033 ATGGATGAATACGCATTGATTGCTTTGAAAAAGGGTGCTCAACTTCTTAAATATGGTCGTAAAGGAAAGCCCAAGTTTTGTCCATTTCAACTTTCCAATGATGAATCATCCTTAATCTGGATTACAAGTAGTGGAGAAAGAAAACTGAAGCTATCTTCTGTCTCTAGAATTATTCCTGGACAAAGAACTGCTGTTTTCCAACGGTACTTGCGTCCTGAGAAGGACTATTTgtctttttcacttatttacagtCACGGAAAGCGATCGCTTGATTTGATTTGCAAAGATAAAGTTGAGGCAGAAGTGTGGATTGCTGGCCTCAAAGCACTGATATCTTCTGGTCAAGGTGGTCGGTCCAAAATTGATGGATGGAGTGATGGGGGCCTCATTCTTGATGATAGCAGAGACTTGACATCAAATAGTCCAAGTGAAAGTTCTGCTAGCACGTCACGAGGCATCAGTTCTCCTGACATTTCTGTCAGTCTTCCAAATACTTCACCAAAGTCCTTTCGACCTGACAATACAATTTCTGAAAGGTCACATGTGCCACCAGACTCAACAAACATGCAAGTGAAAGGATCTGGTTCAGATGCTTTTCGTGTGAGTGTTTCAAGTGCCCCCAGTACATCTAGTCATGGATCTGCACCAGATGACTATGATGCTCTGGGGGATGTATACATATGGGGGGAGGTTTTCTGTGAAAATGTTAAAGTAGGAGCtgataaaaatgtcaattatTTCATCCCGAGGGCAGATGTACTTGTCCCCAGACCACTGGAATCCAATGTAGTTTTAGATGTACATCATATAGCATGTGGTGTTAGACATGCTTCTCTAGTCACTAGGCAAGGTGAAGTTTTTACATGGGGCGAAGAATCGGGAGGACGCCTTGGCCATGGTGTTGGGAAGAATGTGGTTCAACCTCGTCTAGTTGAAGCATTAACTTCTACAACTGTTGATTTTGTAGCCTGTGGGGAGTTCCATTCCTGTGCTGTTACAATGGCCGGGGAACTATATACATGGGGTGATGGTACTCATAATGCTGGGCTTCTTGGTCATGGCAGTGATGTCAGTCATTGGACACCAAAGAGAATTGCAGGTCCATTAGAGGGACTTCAAATTGCATTTGTTGCTTGTGGTCCATGGCACACAGCCTTGATAACTTCAACAGGGCAGCTGTTTACATTTGGTGATGGAACATTCGGTGTCTTGGGCCATGGAGACAGGGAAAGTGTTTCATATCCTAGAGAAGTGGAATCCTTATCAGGATTGAGGACAATAGCTGTTGCATGTGGAGTGTGGCATACTGCAGCTGTTGTAGAGGTTATCGCAACACACTCCAGTACAAGTGTATCATTAGGTAAATTGTTTACTTGGGGTGATGGAGACAAAAATCGCCTTGGACATGGGGACAAGGAGACACATCTTAAACCAACTTGTGTGCCTGCACTTATTGAttacaattttcataaaattgctTGTGGGCACAGTTTGACAGCAGGCCTGACGACATCTGGACGTGTTTTTACTATGGGAAGTACTGTTTATGGTCAGCTCGGGAATCCCCAATCTGATGGAAAGCTTCCCTGCTTGGTTGGAGACAAGATTGCCGGGGAATCCGTTGAAGAAATTGCATGTGGTGCATATCATGTTGCCGtattaacatccaaaaatgaagTGTATACTTGGGGAAAAGGTGCAAATGGAAGATTGGGTCATGGAGATATTGAAGATCGAAAAACACCAGCTTTGGTTGAAGCATTGAAGGATAGACATGTGAAATATATTTCATGTGGTTCAAACTACTCTGCTGCCATATGCCTTCATAAGTGGGTATCTGGTTCTGAGCAGTCTCAGTGCTCTACTTGTAGACAGGCATTTGGCTTCACTAGAAAGAGGCACAATTGTTATAACTGTGGACTTGTCCACTGCCATTCGTGCAGTTCAAGGAAAGCACTAAGAGCAGCACTGGCTCCTAATCCTGGCAAGCCATATCGTGTGTGTGATTCTTGTTATGCAAAATTGAACAAGGTTGCAGAAGCTCGCAATAATAATAGAAGGAATGCCTTGCCTCGTCTGTCAGGTGAAAACAAGGATAGGCTAGACAAGTCTGACCTAAGATTGCCCAAGGCAGTAATTCCTTCTAACATGGATTTGATAAAACAGCTAGATAGTAAGGCAACTAAGCAAGGAAAGAAAGGTGATACATTCTCACTGGTTCGCACTTCACAAGCACCTTCTTTGCTCCAGCTGAAAGATGTTGTCTTGTCCACTGCTTTTGATCTGAGACGAACAGTTCCAAGACCGGTGGTTGCACCATCAGGAGTAAGTTCAAGATCTGTGTCACCTTACTCTAGAAGACCAAGCCCCCCTCGTTCAGCTACGCCTATTCCAACAACTTCTGGACTttccttctccaaaagtattgcTGATAGTTTGAAGAAAACAAATGAACTTTTAAATCAAGAAGTGCAGAAGTTACATGCTCAGGTCGAGAGCCTGAGACAGAGATGTGAACTGCAAGAATTAGAGCTTCAAAGGTCTGCTAAAAAGACTCAAGAAGCTATGGCACTCGCTGCTGAGGAATCTGCGAAATGTAAAGCTGCGAAAGAGGTTATAAAGTCACTCACAGCACAGCTCAAAGATCTGGCTGAGAAGCTTCCTCCTGGAGTTTATGATGCTGAGAACATTAGGCCAGCTTACCTACCAAATGGTCTTGAGCCAAATGGCATCCACCATCTAGATTCAAATGGGGAGCAGCACTCCAGGGCAGAGTCAATCAGTGGCTCTAGTTTGGCCTCCATGGGACTTGAATCCTCTCTATTGAATAGAACAGTGGGGAATTCACCAGGAACTTATGGAACTAATCTTCACCAGCAAATATGGAGCCCCTTGACCTCTAATGGGACCAATAATTATCCAGATGTTAAATTGCCAAATGGTGGTGTGATTCAGGCAAGCAGTGGTAGCATGTCAGACACTGTTGAAGGTAGGGATTCTGGACATTTCCACGACGACGAGAGTGGTTTGAAATCGAGGAATGCTGCACTGGCTGCTAATAGTAATCAAGTTGAGGTAGAATGTATTGAACAGTATGAACCCGGTGTCTACATAACACTTGTGGCACTGCGCGATGGAACAAGAGATCTGAAGCGAGTGCGcttcagCCGAAGGAGATTCGGAGAGCACCAAGCAGAAACCTGGTGGTCAGAGAACAGGGAGAAGGTATATGAAAGATACAACATTTGCACGGACAAGTCTGCCAACCAAGCGGCATGTAGTTCAGAGGGTGCTGGTTTGCCTGTTTCCCAAACTTACGAGAAGTAG 3327 0.4331 MDEYALIALKKGAQLLKYGRKGKPKFCPFQLSNDESSLIWITSSGERKLKLSSVSRIIPGQRTAVFQRYLRPEKDYLSFSLIYSHGKRSLDLICKDKVEAEVWIAGLKALISSGQGGRSKIDGWSDGGLILDDSRDLTSNSPSESSASTSRGISSPDISVSLPNTSPKSFRPDNTISERSHVPPDSTNMQVKGSGSDAFRVSVSSAPSTSSHGSAPDDYDALGDVYIWGEVFCENVKVGADKNVNYFIPRADVLVPRPLESNVVLDVHHIACGVRHASLVTRQGEVFTWGEESGGRLGHGVGKNVVQPRLVEALTSTTVDFVACGEFHSCAVTMAGELYTWGDGTHNAGLLGHGSDVSHWTPKRIAGPLEGLQIAFVACGPWHTALITSTGQLFTFGDGTFGVLGHGDRESVSYPREVESLSGLRTIAVACGVWHTAAVVEVIATHSSTSVSLGKLFTWGDGDKNRLGHGDKETHLKPTCVPALIDYNFHKIACGHSLTAGLTTSGRVFTMGSTVYGQLGNPQSDGKLPCLVGDKIAGESVEEIACGAYHVAVLTSKNEVYTWGKGANGRLGHGDIEDRKTPALVEALKDRHVKYISCGSNYSAAICLHKWVSGSEQSQCSTCRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCDSCYAKLNKVAEARNNNRRNALPRLSGENKDRLDKSDLRLPKAVIPSNMDLIKQLDSKATKQGKKGDTFSLVRTSQAPSLLQLKDVVLSTAFDLRRTVPRPVVAPSGVSSRSVSPYSRRPSPPRSATPIPTTSGLSFSKSIADSLKKTNELLNQEVQKLHAQVESLRQRCELQELELQRSAKKTQEAMALAAEESAKCKAAKEVIKSLTAQLKDLAEKLPPGVYDAENIRPAYLPNGLEPNGIHHLDSNGEQHSRAESISGSSLASMGLESSLLNRTVGNSPGTYGTNLHQQIWSPLTSNGTNNYPDVKLPNGGVIQASSGSMSDTVEGRDSGHFHDDESGLKSRNAALAANSNQVEVECIEQYEPGVYITLVALRDGTRDLKRVRFSRRRFGEHQAETWWSENREKVYERYNICTDKSANQAACSSEGAGLPVSQTYEK 1108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0033 1108 Pfam Pleckstrin homology domain 31 111 IPR001849 -
Ssu9g0033 1108 ProSiteProfiles BRX domain profile. 1026 1081 IPR013591 -
Ssu9g0033 1108 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 336 390 IPR000408 -
Ssu9g0033 1108 MobiDBLite consensus disorder prediction 909 929 - -
Ssu9g0033 1108 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 506 557 IPR000408 -
Ssu9g0033 1108 Gene3D - 348 443 IPR009091 -
Ssu9g0033 1108 Gene3D - 185 347 IPR009091 -
Ssu9g0033 1108 SUPERFAMILY RCC1/BLIP-II 222 611 IPR009091 -
Ssu9g0033 1108 SUPERFAMILY PH domain-like 5 111 - -
Ssu9g0033 1108 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 8 1088 - -
Ssu9g0033 1108 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 429 439 IPR000408 -
Ssu9g0033 1108 Pfam Transcription factor regulating root and shoot growth via Pin3 1026 1080 IPR013591 -
Ssu9g0033 1108 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 558 609 IPR000408 -
Ssu9g0033 1108 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 607 683 IPR013083 -
Ssu9g0033 1108 MobiDBLite consensus disorder prediction 133 194 - -
Ssu9g0033 1108 Pfam Regulator of chromosome condensation (RCC1) repeat 336 387 IPR000408 -
Ssu9g0033 1108 Pfam Regulator of chromosome condensation (RCC1) repeat 391 439 IPR000408 -
Ssu9g0033 1108 Pfam Regulator of chromosome condensation (RCC1) repeat 505 554 IPR000408 -
Ssu9g0033 1108 Pfam Regulator of chromosome condensation (RCC1) repeat 454 500 IPR000408 -
Ssu9g0033 1108 Pfam Regulator of chromosome condensation (RCC1) repeat 284 332 IPR000408 -
Ssu9g0033 1108 Pfam Regulator of chromosome condensation (RCC1) repeat 559 606 IPR000408 -
Ssu9g0033 1108 PRINTS Chromosome condensation regulator RCC1 signature 553 574 IPR000408 -
Ssu9g0033 1108 PRINTS Chromosome condensation regulator RCC1 signature 286 302 IPR000408 -
Ssu9g0033 1108 PRINTS Chromosome condensation regulator RCC1 signature 495 513 IPR000408 -
Ssu9g0033 1108 PRINTS Chromosome condensation regulator RCC1 signature 377 393 IPR000408 -
Ssu9g0033 1108 PRINTS Chromosome condensation regulator RCC1 signature 336 352 IPR000408 -
Ssu9g0033 1108 PRINTS Chromosome condensation regulator RCC1 signature 393 407 IPR000408 -
Ssu9g0033 1108 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 614 676 IPR017455 -
Ssu9g0033 1108 Coils Coil 810 851 - -
Ssu9g0033 1108 CDD PH_PLC_plant-like 3 112 - -
Ssu9g0033 1108 Pfam FYVE zinc finger 610 676 IPR000306 GO:0046872
Ssu9g0033 1108 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 8 1088 - -
Ssu9g0033 1108 SMART fyve_4 609 677 IPR000306 GO:0046872
Ssu9g0033 1108 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 454 505 IPR000408 -
Ssu9g0033 1108 Coils Coil 859 886 - -
Ssu9g0033 1108 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 391 442 IPR000408 -
Ssu9g0033 1108 MobiDBLite consensus disorder prediction 972 1008 - -
Ssu9g0033 1108 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 223 283 IPR000408 -
Ssu9g0033 1108 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 377 387 IPR000408 -
Ssu9g0033 1108 Gene3D - 1 117 IPR011993 -
Ssu9g0033 1108 MobiDBLite consensus disorder prediction 771 803 - -
Ssu9g0033 1108 SUPERFAMILY FYVE/PHD zinc finger 610 683 IPR011011 -
Ssu9g0033 1108 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 284 335 IPR000408 -
Ssu9g0033 1108 MobiDBLite consensus disorder prediction 134 173 - -
Ssu9g0033 1108 Pfam Transcription factor BRX N-terminal domain 861 896 IPR027988 -
Ssu9g0033 1108 MobiDBLite consensus disorder prediction 179 194 - -
Ssu9g0033 1108 Gene3D - 444 606 IPR009091 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0033 Ssu-Chr9 4580964 4597658 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0033 1027 1082 Major Intrinsic Protein MIP AT1G31880 51.786 3.43e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0033 - - gmx:100805364 1956.41