Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0027 ATGGCCTCTTTCATCCCTTGGCGCTTAGTTTTGGCTATTATGATTATTGCCCTTTTCACCCCAAACCTTAGTTTCGCAAAGCAATCCAAGATAAAtggtttgaaaatgaatgtgattGATCGATGTTGGAGACCAAATCCTGAATGGAGGAGGCATAGATCTCAATTAGCCACATGTTCCGTGGGCTATGTTGGTAAGATGACAAACAACATTGTTACTGACCCCAGTGATGATCCTATAAACCCCAAACCTGGCACCTTGAGGCATGGAGCTTCTGTGATTCAAGGTAAAGTGTGGATCACATTCCAAAGAGACATGCACATCAAACTCGAGAGGCCCCTTCTCATTAGTAGTTTCACCACCATTGATGGTCGGGGAGTTAACATCAACATTGCTAATAATGCATGCTTAATGATCTTTAAGGCTACCAACATAATCATCCATGGCATTCGAGTTCATCATTGCAAACCTCAAGCTCCTGGGATGGTGATGGGGACCGAAGGAAAGGTGATTCCTTTAGGCCACGTAGATGGGGATGCAATTAGATTGATTACTGCTTCAAAGATTTGGATTGATCATAATACGCTTTATGATTGCCAAGATGGTTTGCTTGATGTAACGCGAGGTTCCACTAATGTGACTATATCCAATAATTGGTTCAGAAACCAAGACAAGGTTATGCTTCTTGGGCATGATGATGGATATGTGAGAGACCAAAATATGAAGGTTACCGTTGTGTACAACCATTTTGGACCTAATTGCAATCAACGCATGCCAAGGATTCGCTATGGATATGCACATGTAGCCAACAATCTTTACCTAGGATGGACACAATATGCCATTGGTGGAAGCATGGAACCTAGCCTCAAAAGTGAAGCTAACCTCTTCATAGCACCAACAACAGGGAGTAAGGAGGTAACATGGAGAAAGGGTAGTCATAAAAATGGGGATAGGTGGGAATTTCATTCAGTGAGGGATGCTTTTGAAAATGGAGCCTCCTTCACCGTAACAAAAGGAGGACGTGTGCCAAAGCCGAATTATAGCAaggaacaaatttttaaaattgttgatgCCAAATATgattttGGGAAGAGAATACAAGGTCCATTTAAGATGGGAAATACTTCCCTAAACTTACATTTACTCCACCTTAAGAAGACAATTGAAAACTTGATATCTTGCAATGTGTAA 1191 0.4013 MASFIPWRLVLAIMIIALFTPNLSFAKQSKINGLKMNVIDRCWRPNPEWRRHRSQLATCSVGYVGKMTNNIVTDPSDDPINPKPGTLRHGASVIQGKVWITFQRDMHIKLERPLLISSFTTIDGRGVNINIANNACLMIFKATNIIIHGIRVHHCKPQAPGMVMGTEGKVIPLGHVDGDAIRLITASKIWIDHNTLYDCQDGLLDVTRGSTNVTISNNWFRNQDKVMLLGHDDGYVRDQNMKVTVVYNHFGPNCNQRMPRIRYGYAHVANNLYLGWTQYAIGGSMEPSLKSEANLFIAPTTGSKEVTWRKGSHKNGDRWEFHSVRDAFENGASFTVTKGGRVPKPNYSKEQIFKIVDAKYDFGKRIQGPFKMGNTSLNLHLLHLKKTIENLISCNV 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0027 396 PANTHER PECTATE LYASE 18-RELATED 3 360 IPR045032 GO:0030570
Ssu9g0027 396 PRINTS Pollen allergen Amb family signature 279 298 IPR018082 -
Ssu9g0027 396 PRINTS Pollen allergen Amb family signature 319 343 IPR018082 -
Ssu9g0027 396 PRINTS Pollen allergen Amb family signature 257 276 IPR018082 -
Ssu9g0027 396 PRINTS Pollen allergen Amb family signature 76 101 IPR018082 -
Ssu9g0027 396 PRINTS Pollen allergen Amb family signature 177 198 IPR018082 -
Ssu9g0027 396 PRINTS Pollen allergen Amb family signature 113 129 IPR018082 -
Ssu9g0027 396 SUPERFAMILY Pectin lyase-like 20 345 IPR011050 -
Ssu9g0027 396 Gene3D - 36 364 IPR012334 -
Ssu9g0027 396 PANTHER PECTATE LYASE 3 360 - -
Ssu9g0027 396 SMART amb_all 105 302 IPR002022 -
Ssu9g0027 396 Pfam Pectate lyase 116 296 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0027 Ssu-Chr9 3534262 3536091 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0027 61 311 Polysaccharide Lyase AT5G09280 69.048 1.52e-137 393
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0027 K01728 - gmx:100780437 667.151