Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g0026 ATGGCCTCTTCCATCCCTTGGCGCTTAGTTTTGGCTATTATGATTATTGCCCTTTTCACTCCAAACCTTAGTTTCGCAAAGCAATCCAAGATAAATGGcttgaaaatgaatgtgattGATCGATGTTGGAGACCAAATCCTGAATGGAGGAGGCATAGATCTCAATTAGCCACATGTTCCGTGGGCTATGCTGGTAAGATGACAAACAACATTGGTAAGGACCTTATTGGTTATAAAGTTACTGACCCCAGTGATGATCCTATAAACCCCAAACCTGGTACCTTGAGGCATGGAGCTTCTGTCATTCAAGGTAAAGTGTGGATCACGTTCCAAAGAGACATGCACATCGAACTCGAGAGGCCCCTTCTCATTAGTAGTTTCACCACCATTGATGGTCGAGGACTTAACATCAACATTGCTAATAATGCATGCTTAATGATCTTTAAGGCTACCAACATAATCATCCATGGCATTCGAGTTCATCATTGCAAACCTCAAGCTCCTGGGATGGTGATGGGGACCGAAGGAAAGGTGATTCCTTTAGGCCACGTAGATGGGGATGCAATTAGATTGATTACTGCTTCAAAGATTTGGATTGATCATAATACGCTTTATGATTGCCAAGATGGTTTGCTTGATGTAACGCGAGGTTCCACTAATGTGACTATATCCAATAATTGGTTCAGAAACCAAGACAAGGTTATGCTTCTTGGGCATGATGATGGATATGTGAGAGACCAAAATATGAAGGTTACCGTTGTGTACAACCATTTTGGACCTAATTGCAATCAACGCATGCCAAGGATTCGCTATGGATATGCGCATGTAGCCAACAATCTTTACCTAGGATGGACGCAATATGCCATTGGTGGAAGCATGGAACCCAGCCTCAAAAGTGAAGCTAACCTCTTCATAGCACCAACAACAGGGAGTAAGGAGGTAACATGGAGAAAGGGGAGTCATAAAAATGGGGATAGGTGGGAATTTCATTCAGTGAGGGATGCTTTTGAAAATGGAGCCTCCTTCACCGTAACAAAAGGAGGACGTGTGCCAAAGCCGAATTATAGCAAGgaacaaagttttaaaattgttgatgCCAAATATGTAAGATCATTGACGCGCTCATCAGGCATGTTACAATGTGATAACCATTCGACAAGTCCTATACAGTTGAATGGTGAAGTTGATGAGCTACCTCGCTAA 1203 0.4156 MASSIPWRLVLAIMIIALFTPNLSFAKQSKINGLKMNVIDRCWRPNPEWRRHRSQLATCSVGYAGKMTNNIGKDLIGYKVTDPSDDPINPKPGTLRHGASVIQGKVWITFQRDMHIELERPLLISSFTTIDGRGLNINIANNACLMIFKATNIIIHGIRVHHCKPQAPGMVMGTEGKVIPLGHVDGDAIRLITASKIWIDHNTLYDCQDGLLDVTRGSTNVTISNNWFRNQDKVMLLGHDDGYVRDQNMKVTVVYNHFGPNCNQRMPRIRYGYAHVANNLYLGWTQYAIGGSMEPSLKSEANLFIAPTTGSKEVTWRKGSHKNGDRWEFHSVRDAFENGASFTVTKGGRVPKPNYSKEQSFKIVDAKYVRSLTRSSGMLQCDNHSTSPIQLNGEVDELPR 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g0026 400 Pfam Pectate lyase 124 304 IPR002022 -
Ssu9g0026 400 PANTHER PECTATE LYASE 5 384 - -
Ssu9g0026 400 MobiDBLite consensus disorder prediction 379 400 - -
Ssu9g0026 400 Gene3D - 36 380 IPR012334 -
Ssu9g0026 400 SMART amb_all 113 310 IPR002022 -
Ssu9g0026 400 PANTHER PECTATE LYASE 18-RELATED 5 384 IPR045032 GO:0030570
Ssu9g0026 400 PRINTS Pollen allergen Amb family signature 358 381 IPR018082 -
Ssu9g0026 400 PRINTS Pollen allergen Amb family signature 185 206 IPR018082 -
Ssu9g0026 400 PRINTS Pollen allergen Amb family signature 121 137 IPR018082 -
Ssu9g0026 400 PRINTS Pollen allergen Amb family signature 84 109 IPR018082 -
Ssu9g0026 400 PRINTS Pollen allergen Amb family signature 265 284 IPR018082 -
Ssu9g0026 400 PRINTS Pollen allergen Amb family signature 327 351 IPR018082 -
Ssu9g0026 400 PRINTS Pollen allergen Amb family signature 287 306 IPR018082 -
Ssu9g0026 400 SUPERFAMILY Pectin lyase-like 20 367 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g0026 Ssu-Chr9 3441712 3443718 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g0026 67 319 Polysaccharide Lyase AT5G09280 69.960 5.47e-142 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g0026 K01728 - gmx:100780437 702.975