Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2538 ATGGCGGCAGCACCCACCGCGAAGGTCCGTCTGATGTGCAGCTACGGCGGGCACATACTCCCTCGTCCCCGCACGAACTGTCTGTTCTACGGCGGCGGCGACACCCGCATCGTTTCAGTGGAGCGGCGCACCCTGGGCACGCTTTCCCCCTTCCTCTCCCACCTCTCGTCCGTTCTGTCTCTCAAATACCCTTTTACTTTGAAGTACCAGCTCCCGCACTTGGAACTCGACTCCCTCATCTCTTTGGCCTCCGACGAGGACTTGCACATCCTCATCGAGGAGCACGACCGAGCCGCTCCCTCTTCCCGCATCAGACTCTTCGTCTTCCCCGCTCCCCTCATTCGCCACCCCAAGACCGAGTCATGGTTCTTCGACGCCCTCAAGAGTTCCTCCATTATGCAGCAAAACGCCGACTCCATGCTCCTCGACACCACCTCCTCTTTTGGCTCCACTTCCTCTTCCTCCGCTTCCTTCACCCCCGTTCCTCCACCTCACGACGACCACCACTTCACCTCCTCCCATTCTATTCCAAGtgATAATACTGTTTCGAGCATTATGTCACACCAGCAGAATATGTGTTACCAAGATCCTGTGGTTCATGTTTCGGAGGCAAGACTCAATGCTGAGTCCGTGGAAGTTGAGAGTAAAATTCCCTACATTTCATCTGGGGTCGTAGCCAATAGTGCCAATGTGGATATAGGGTATTCTTCATTTCCACAGTTTAATCAAGTGGAGAGGCCAAATTTTCAGTTTGTGCAGACTGCTACGCACTTTGTACCACTTCACACTTACCACAACCCACGTCCTTTGCAGCATCTGGTTTATCATCCCAATCAGCTTTGCCCTGTATACCTTGTGCCTCTTGGGAACATGCCTCCCAATACTTTGCCTGTTACTGCCGCAGCCCAAGCTTCAATGAATCTAAATGCTTCCTCTATAAATTCCCATGTAGCTCACAACTCTACCTCTCACACTCAGAATTACTTAACAGACAATGAGACTTCATCTTTTGTTCATGTCCCTTACAATGGAAATCAGGAACAAGAAATGGATATTTATCCAATGCATCATCTATCTCAGTCTCAGAATATATCTGTTTCTTCCACGGAATCTCCCAAGTGTGGAAATGAACTTGACGATGACCTTGCTCATGTTCAGATATACAAATCTCAGCCCCCACCTCCGGCATTGCCTTCCAAATACCAAACCATGACAAAAGCCTCCACAAACCTGTTGTCCAAAGCTCTTGCTCAGTTGCATGTGGATAAACTCATGCCGCAGACAGAAACATCGCAGCCACAGTGA 1305 0.5004 MAAAPTAKVRLMCSYGGHILPRPRTNCLFYGGGDTRIVSVERRTLGTLSPFLSHLSSVLSLKYPFTLKYQLPHLELDSLISLASDEDLHILIEEHDRAAPSSRIRLFVFPAPLIRHPKTESWFFDALKSSSIMQQNADSMLLDTTSSFGSTSSSSASFTPVPPPHDDHHFTSSHSIPSDNTVSSIMSHQQNMCYQDPVVHVSEARLNAESVEVESKIPYISSGVVANSANVDIGYSSFPQFNQVERPNFQFVQTATHFVPLHTYHNPRPLQHLVYHPNQLCPVYLVPLGNMPPNTLPVTAAAQASMNLNASSINSHVAHNSTSHTQNYLTDNETSSFVHVPYNGNQEQEMDIYPMHHLSQSQNISVSSTESPKCGNELDDDLAHVQIYKSQPPPPALPSKYQTMTKASTNLLSKALAQLHVDKLMPQTETSQPQ 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2538 434 CDD PB1_UP2 12 109 - -
Ssu8g2538 434 PANTHER OCTICOSAPEPTIDE/PHOX/BEM1P FAMILY PROTEIN 6 424 - -
Ssu8g2538 434 SMART PB1_new 23 111 IPR000270 GO:0005515
Ssu8g2538 434 MobiDBLite consensus disorder prediction 153 182 - -
Ssu8g2538 434 SUPERFAMILY CAD & PB1 domains 26 112 - -
Ssu8g2538 434 Pfam PB1 domain 30 110 IPR000270 GO:0005515
Ssu8g2538 434 PANTHER OS05G0427100 PROTEIN-RELATED 6 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2538 Ssu-Chr8 65318130 65319864 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2538 9 111 MAP Kinase Kinase Kinase AT1G04700 47.170 4.86e-19 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2538 - - var:108318981 470.7