Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2534 ATGTCTTCTTCCTCTAGTACATGGACAGCTCAGGACAACAAAGCGTTTGAAAAAGCTCTAGCTGTTTATGACAAGGACACCCCAAACCGTTGGTGCAATATTGCTAGGGCTGTTGGTGGAAAAACTCCAGAGGAAGTGAAGAGGCACTATGATCTCCTTGTGGAGGACATCAGGCGTATTGAGTCAGGGCAAGTGCCCTTTCCAACCTACAGGAACGTCAAAGATGGGGCATGA 234 0.4786 MSSSSSTWTAQDNKAFEKALAVYDKDTPNRWCNIARAVGGKTPEEVKRHYDLLVEDIRRIESGQVPFPTYRNVKDGA 77
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2534 77 ProSiteProfiles Myb-like domain profile. 1 54 IPR001005 -
Ssu8g2534 77 ProSiteProfiles SANT domain profile. 3 58 IPR017884 -
Ssu8g2534 77 CDD SANT 7 50 IPR001005 -
Ssu8g2534 77 Pfam Myb-like DNA-binding domain 6 50 IPR001005 -
Ssu8g2534 77 Gene3D - 1 67 - -
Ssu8g2534 77 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 3 73 IPR044636 GO:0003700
Ssu8g2534 77 SMART sant 4 56 IPR001005 -
Ssu8g2534 77 PANTHER TRANSCRIPTION FACTOR MYB/SANT FAMILY-RELATED 3 73 - -
Ssu8g2534 77 SUPERFAMILY Homeodomain-like 6 62 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2534 Ssu-Chr8 65296149 65296382 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Ssu8g2534 Myb_DNA-binding 3.6e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2534 - - gmx:100784910 144.436