LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu8g2531	ATGTTCAACATAGTGAAATGGTATAATAAGAGTATTTCAGATCATTATGGAAGTGTCAATGGCAGTGAGGAATATCAATTCAAACTTGGAATGTTGCATTGCAATTCCTTATCTGCTTCATGTGAAAAGATGTATGAGAAAGCAAGGAGAGGAGAAAGCATTGAACTTTCACCTAGACGAATTTCAATTTTCCAGTTTGACATAGAGCGTAGCTTGGATGACAGagTGACTTGTTTCAAAGGGACATATATTCGGTCACTCTCTGCAGATGTTGGGAAGGCTCTTGGCGCAGACGAAGTGTTGAAGGGCAGTAAGAGTGGACTTTTACCTTCCAAAGTAACCGTTGAAATGAGCAACAACTTAACTTTGATGCAGCTCGATCTTCATTGCAAAGACAAGCATAATGATCTCGGCCCTCAAACACTGAATGATGGCGACACATATAGTTTTAGATTTAGGCCCAATGCCTTTGCGGATGTAACCTTGTACTTTTGTCGCTTTGCATGGATAGGAACGGTATACCATTTTGACATTTATGATCAAGAGCGAGATAAGCTTTCGTGTGATGATAATTGCTGTTCTTGGCAAATATTTGAGGAGGGGCCTTGTAAGATCAAGGAGAGGTCTCGTGAATGCTTTAAGTGGAATGAGTAA	654	0.4006	MFNIVKWYNKSISDHYGSVNGSEEYQFKLGMLHCNSLSASCEKMYEKARRGESIELSPRRISIFQFDIERSLDDRVTCFKGTYIRSLSADVGKALGADEVLKGSKSGLLPSKVTVEMSNNLTLMQLDLHCKDKHNDLGPQTLNDGDTYSFRFRPNAFADVTLYFCRFAWIGTVYHFDIYDQERDKLSCDDNCCSWQIFEEGPCKIKERSRECFKWNE	217

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu8g2531	217	PANTHER	-	105	215	IPR010264	-
	Ssu8g2531	217	SUPERFAMILY	Pseudouridine synthase	39	97	IPR020103	GO:0001522\|GO:0003723\|GO:0009451\|GO:0009982
	Ssu8g2531	217	Pfam	Plant self-incompatibility protein S1	114	215	IPR010264	-
	Ssu8g2531	217	PANTHER	S-PROTEIN HOMOLOG 18-RELATED	105	215	-	-
	Ssu8g2531	217	Gene3D	Pseudouridine synthase	32	128	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu8g2531	Ssu-Chr8	65241627	65246520	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu8g2531	98	216	Carbohydrate Esterase	AT3G16970	37.600	8.91e-21	82.8

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu8g2531	K03177		-	pvu:PHAVU_004G003500g	139.428

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ssu8g2531	8	65241627	65246520	Ssu8g2531	8	65241627	65246520	ECH