Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2530 ATGGCTTCAACCtccaaaattatgttttcacttTCTATGCTGTTAACTGTACTTGTTGCTTTGCAGTTGAAAGGCAGTGAGAGTGGAGTTTTACCTTCCAAACTAAAAGAGGGATTTTTACCTTCCAAAGTAACGGTTGAAATGAGCAACAACTTAACTTTGAAGCAGCTCGATCTTCATTGCAAAGACAAGCATAATGATCTCGGCCCTCAAACACTGAATGTTGGCGATACATATAGTTTTAGATTTAGGCCTAATGCCTTTGCGAATGTAACCTTGTACTTTTGTCGCTTTGTATGGGTAGGAGCGGtacattattttgacatttatgTACAAGAGCGAGATACGCCGACGTGTGATGATAATCGGTGTTCTTGGCAAATATTTGAGGAGGGACCTTGTAAGATTATGGAGAGGTCTCGTGAATGCTTTAAGTGGAATGAAGTACCTATAGGAAGGAGACAGCTTGTGGAAGGGAATAATATTTTACCTCTGTAA 498 0.3775 MASTSKIMFSLSMLLTVLVALQLKGSESGVLPSKLKEGFLPSKVTVEMSNNLTLKQLDLHCKDKHNDLGPQTLNVGDTYSFRFRPNAFANVTLYFCRFVWVGAVHYFDIYVQERDTPTCDDNRCSWQIFEEGPCKIMERSRECFKWNEVPIGRRQLVEGNNILPL 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2530 165 PANTHER S-PROTEIN HOMOLOG 18-RELATED 20 146 - -
Ssu8g2530 165 Pfam Plant self-incompatibility protein S1 45 146 IPR010264 -
Ssu8g2530 165 PANTHER - 20 146 IPR010264 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2530 Ssu-Chr8 65239038 65239535 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2530 17 148 Carbohydrate Esterase AT3G16970 36.232 1.19e-24 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2530 - - pvu:PHAVU_004G003500g 160.999