Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2529 ATGCTCAAACCAACATCTCTAACCCACATATCCTCCTTTCTCTTATCCCATTCCGGAGCCATGTCCTCTGCAAGGTTCGGATTGTTGTGTCACTGTCACAGACACTTCCCAACACtccctcctcctccttcttcttcttcttccttctccttccccACACCGAGACTCTTCTCCACCCCATACCCTCTCCAATACGAACTCATCATCAACCGTCCATCCCAACCCCACACTCCCCGCCCACCACCTGTTCGACACATTGACTCCCCTTCCCAAACCGAACCCGACGAGCCCGATTCCCAGGCCCAACCCGAACTCGACAAGGCCCAGAGGAAGTACTACAACAAACGCAGGAAGAGGATGTACGGCTCCGACTCCGACGAAGACAGCAACGCGTCACGCCACGATGACTTCGTGGAGCTGAAGCCCCACGTGGTGGAGTTTCCCACGCTGCACAAGAGAGAGGAAGAGTTGTATTTCTACGACGCCTTCACGTATCCCTGGGAGAAGGAGAAGCATTACAAAATGGTTTATCAGTTGGAGAAGAAGTACTTTCCCGATCAGTGCCTCGATAAGGCATTCCTCCAACCGGGACAATCAAATGCAAATGCAAATGCAAATGTAAATACAAATGCAAATTCAAAGGACAAGGGCAAGGGGGGTAGGAAGAAAGTTGGTGTTGGTGGTGATGAGAAGTTGGTGTTTTTTGAGGGGAAAGAGAAGGGTGAGGAGGATGGAAGTGGAAGTAGAGATCTTACGGAGAAGAAGGTTGAGGAGTTCTTTAAGGGTTTGAAGAAAGTTCCTAATAATAACAAGGATGTTCAACTTGGAGACCCTTTTCTTTCGTCAGGGAGGACTGGCCTCCCTCCCGTCTGGGATAGTCCACATGGCACTGTGCTTTTGGTCAACAAACCAAAAGGTTGGACTTCATTCACGGTTTGTGGAAAGCTGCGTCGCCTCGTCAAAGTGAAAAAGGTAGGTCATGCTGGGACTCTTGACCCGATGGCTACTGGTTTATTGATTGTTTGTGTTGGTAAAGCAACAAAGCTGGTAGACAGATATCAAGGGATGATTAAGGGTTATAGTGGGGTTTTCCGCTTGGGGGAGGCTACTTCAACATGGGATGCTGATTCACCAGTCATTCAACGTGAACCATGGGAGCACATCAAAGACGAGGATATAAAGAGAAATGCTTTGTCCTTATGTGGGGAGATTTGGCAAGTTCCTCCTATGTTCTCAGCTATTAAAGTTGGAGGGGAAAAGATGTATGAGAAAGCAAGGAGAGGAGAAAGCATTGAACTTTCACCTAGACGAATTTCAATTTTCCAGTTTGACATAGAGCGTAGCTTGGATGACAGacaaaatttgatatttagagTGACATGTTCCAAAGGGACATATATTCGGTCACTCTGTGCAGATTTTGGGAAGGCTCTTGGCAGCTGTGCCCATTTAACTGCTCTCCGAAGAGATTCAATTGGGCAATATTCAGCAGATGATGCATGGGACTTTCAAGAGCTGGAAGAGGCTATCACCAAAAATTTTCTCTAA 1548 0.4567 MLKPTSLTHISSFLLSHSGAMSSARFGLLCHCHRHFPTLPPPPSSSSSFSFPTPRLFSTPYPLQYELIINRPSQPHTPRPPPVRHIDSPSQTEPDEPDSQAQPELDKAQRKYYNKRRKRMYGSDSDEDSNASRHDDFVELKPHVVEFPTLHKREEELYFYDAFTYPWEKEKHYKMVYQLEKKYFPDQCLDKAFLQPGQSNANANANVNTNANSKDKGKGGRKKVGVGGDEKLVFFEGKEKGEEDGSGSRDLTEKKVEEFFKGLKKVPNNNKDVQLGDPFLSSGRTGLPPVWDSPHGTVLLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIKRNALSLCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIFQFDIERSLDDRQNLIFRVTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWDFQELEEAITKNFL 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2529 515 Pfam TruB family pseudouridylate synthase (N terminal domain) 317 467 IPR002501 GO:0006396
Ssu8g2529 515 Hamap tRNA pseudouridine synthase B [truB]. 295 515 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Ssu8g2529 515 CDD PseudoU_synth_EcTruB 298 509 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Ssu8g2529 515 Pfam tRNA pseudouridylate synthase B C-terminal domain 468 511 IPR032819 -
Ssu8g2529 515 PANTHER TRNA-PSEUDOURIDINE SYNTHASE 271 513 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Ssu8g2529 515 MobiDBLite consensus disorder prediction 115 134 - -
Ssu8g2529 515 SUPERFAMILY Pseudouridine synthase 297 510 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Ssu8g2529 515 MobiDBLite consensus disorder prediction 200 224 - -
Ssu8g2529 515 Gene3D Pseudouridine synthase 292 514 - -
Ssu8g2529 515 TIGRFAM TruB: tRNA pseudouridine(55) synthase 297 506 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Ssu8g2529 515 MobiDBLite consensus disorder prediction 71 107 - -
Ssu8g2529 515 MobiDBLite consensus disorder prediction 200 214 - -
Ssu8g2529 515 MobiDBLite consensus disorder prediction 118 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2529 Ssu-Chr8 65231127 65236333 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2529 280 489 NAC Transcription Factor Family AT3G57150 33.175 1.51e-20 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2529 K03177 - gmx:100793939 719.153