Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2526 atgggATCTGGCAATGAGGTTCACTCAGTTGGGGAGTTCAGTTTAGATTCTAAGTGGCTTGTAGATCCCAAACAACTATTTATTGGTCCAAAAATTGGGGAAGGTGCTCATGCCAAAGTATACGAGGGAAAatataaaaatcaaaatattgctGTTAAGATTATCAACAAGGGAGAAACTCTGGAAGAGATTTCAAGGAGAGAGGCTCGGTTTGCCAGAGAGGTTGCTATGTTGTCCAGAGTTCAACACAAAAATCTGGTTAAGTTTATTGGGGCTTGCAAAGAACCTGTTATGGTTATAGTAACTGAACTTCTATTAGGTGGAACATTGCGCAAATATCTCTTGAATATGCGGCCAAAGTGCTTGGATATGCCTGTGGCTGTTGGATTTGCTCTTGATATTGCCCGAGCAATGGAGTGTTTACATTCCCATGGGATCATTCACCGTGATCTTAAACCCGATAACTTGATCTTGACAGGTGATCATAAGACAGTTAAACTTGCTGATTTTGGTCTAGCCAGAGAAGAGTCCTTAACAGAGATGATGACTGCTGAAACAGGAACATATCGTTGGATGGCTCCAGAACTTTACAGCACTGTGACTCTAAGACAAGGCGAGAAGAAGCATTACAACCACAAGGTGGATGCCTACAGCTTTGCAATTGTGTTTTGGGAACTCATCCATAATAAGTTGCCCTTTGAAGGCATGTCTAATCTACAGGCAGCATATGCAGCTGCTTTTAAGAATACAAGGCCCAGTGCTGAAGACCTTCCTGAGGATTTAGCTTTGATTGTAACTTCATGTTGGAAAGAGGATCCAAATGAGCGAGCAAATTTCAGTCAAATCATACAGATGCTCCTTCGATATCTCTCCACTATGTCACCTCCAGAGCCAGTTGTTCCTCTGCGGATGACTTCATCTGAGAATGCTGTGTTGCCACCAGAATCTCCTGGTACAAGTGCATTAATGCTTGGAAGAGATGACTCTGGAGAAACCCCAACAGCCAAAGTGGAAGACAGGAGCTGGCTTATTGATATTGGAGGATTTTCGCGGAAAGTGAACAATACTACTCTGTCAACAGCTGATCAAATCAAGGACTGTGGAACATATTGTGAATGCCCGAAATGTCattatcatattgataacattgATGTTTCTCATGAGTGGCCTGGCTTTCCTGTCGGTGTAAAGTTTGATCCTTCTGATGTTGAGCTTTTAGAGCATTTAGCAGCAAAGTGTTGTATTGGAAACAAAAAGCCACACATGTTTATTCATGAGTTCATCCCAACTCTAGAAGGAGAGCAAGGTATTTGCTACACACGTCCAGAAAATCTTCCAGGTGCTAAGAAAGATGGGAATAGTGTCCATTTCTTTCACAAAACGGTTAATGCATATGCTACTGGACAAAGGAAGCGTCGAAAGATTCATCATCAACACGGTTTAACTGAAGAGCATGTGCGCTGGCACAAGACTGGTAGGACCAAAGCTGTAATAGAAGATGGAGTGCATAAGGGCTTTAAGAAGATCATGGTCCTTTATGTACGATCTAAGAAAGGGTCCAAGCCATATAAAACCAATTGGGTTATGCATCAGTACCATCTAGGGagtgaagaagatgaaaaggatggtgAATATGTGGTTTCAAAAATCTTTTatcaacagcagaagcagaCTGCGAAGAATGAAGAGAATCCAGTGGTTGAGGATTCTAGCATAGCGGCACAAGCAGGTCCAGGAACCCCAAAACCAAATCCCCCTACTCGACCTTGTACAGGCAAATGTGATGACAATTTCGATGAAAATGAACTTGTGTCATTCATCCAGGATGCCAAGCCTATACCTGGAGAATCACAAGCACCGCCATGTGATGTTCAGTATGGGGACAATAAGGATGACCCTGCATGGTTGGCTGGTGAATCACAGGCTGACTGTGACTTTGATGGCTTGGATGACATATTATTATGCAAAGAGATGTTAGGTTCGTCTGCTCTCTTAAATAATTCTGGATTGATCTCCACTTTTAACGACGACGCAAACAATAATGATTATGTATCTTATGAAGTTTCTGCCCTGGACACCCTGGAAttggatactcctccagattttgATCTTTCTAATTTGCAATTTGGTTCTCAAGACAGCACCCTTCAGTGGATTGACAAGCTATAA 2169 0.4039 MGSGNEVHSVGEFSLDSKWLVDPKQLFIGPKIGEGAHAKVYEGKYKNQNIAVKIINKGETLEEISRREARFAREVAMLSRVQHKNLVKFIGACKEPVMVIVTELLLGGTLRKYLLNMRPKCLDMPVAVGFALDIARAMECLHSHGIIHRDLKPDNLILTGDHKTVKLADFGLAREESLTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNHKVDAYSFAIVFWELIHNKLPFEGMSNLQAAYAAAFKNTRPSAEDLPEDLALIVTSCWKEDPNERANFSQIIQMLLRYLSTMSPPEPVVPLRMTSSENAVLPPESPGTSALMLGRDDSGETPTAKVEDRSWLIDIGGFSRKVNNTTLSTADQIKDCGTYCECPKCHYHIDNIDVSHEWPGFPVGVKFDPSDVELLEHLAAKCCIGNKKPHMFIHEFIPTLEGEQGICYTRPENLPGAKKDGNSVHFFHKTVNAYATGQRKRRKIHHQHGLTEEHVRWHKTGRTKAVIEDGVHKGFKKIMVLYVRSKKGSKPYKTNWVMHQYHLGSEEDEKDGEYVVSKIFYQQQKQTAKNEENPVVEDSSIAAQAGPGTPKPNPPTRPCTGKCDDNFDENELVSFIQDAKPIPGESQAPPCDVQYGDNKDDPAWLAGESQADCDFDGLDDILLCKEMLGSSALLNNSGLISTFNDDANNNDYVSYEVSALDTLELDTPPDFDLSNLQFGSQDSTLQWIDKL 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2526 722 PANTHER PROTEIN KINASE ATN1 1 329 - -
Ssu8g2526 722 MobiDBLite consensus disorder prediction 573 592 - -
Ssu8g2526 722 ProSitePatterns Serine/Threonine protein kinases active-site signature. 146 158 IPR008271 GO:0004672|GO:0006468
Ssu8g2526 722 Gene3D Phosphorylase Kinase; domain 1 14 105 - -
Ssu8g2526 722 CDD STKc_MAP3K-like 32 286 - -
Ssu8g2526 722 Gene3D NAC domain 401 558 IPR036093 GO:0003677|GO:0006355
Ssu8g2526 722 SUPERFAMILY NAC domain 377 553 IPR036093 GO:0003677|GO:0006355
Ssu8g2526 722 Pfam No apical meristem (NAM) protein 393 534 IPR003441 GO:0003677|GO:0006355
Ssu8g2526 722 SUPERFAMILY Protein kinase-like (PK-like) 17 312 IPR011009 -
Ssu8g2526 722 SMART serkin_6 26 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g2526 722 Pfam Protein tyrosine and serine/threonine kinase 29 286 IPR001245 GO:0004672|GO:0006468
Ssu8g2526 722 ProSiteProfiles Protein kinase domain profile. 26 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g2526 722 PANTHER SERINE-THREONINE PROTEIN KINASE 1 329 - -
Ssu8g2526 722 ProSiteProfiles NAC domain profile. 392 553 IPR003441 GO:0003677|GO:0006355
Ssu8g2526 722 ProSitePatterns Protein kinases ATP-binding region signature. 32 53 IPR017441 GO:0005524
Ssu8g2526 722 Gene3D Transferase(Phosphotransferase) domain 1 107 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2526 Ssu-Chr8 65200758 65209227 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2526 1 373 MAP Kinase Kinase Kinase AT3G27560 73.333 0.0 555
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Ssu8g2526 PK_Tyr_Ser-Thr 5.4e-55 CL0016
TF NAC Ssu8g2526 PK_Tyr_Ser-Thr 5.4e-55 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2526 - - gmx:100780662 683.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0038 3 706584 711740 Ssu8g2526 8 65200758 65209227 PCT