Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2516 ATGGAAAAAGAGGTTGTGGAAAACCTTTGGAACGGTGATAGAGAATCTCAAATTCAAGCAGCTATGAAACTTGGTAGATTAAGTAGTAAGCAGAGGCACAAGTTGGAAGAAAGTGATGTTATGGTTCCTCTGGTTTGCATGCTTCATTCTGAAAACTATGAAGTCATAGAAGCTGCTCTTTGTGCTTTGCTCAGCCTTTCCTTCGGCAGTGAAAGAAACAAGATTCGGATCATCAAATCTGGAGCTTTGCCAGTTTTCCTGAGTCTCCTCCGTTGTCATAGCCAGACAGTGATGCAATTGACATTGGCAGCCATGCTAACCCTCTCTTCTTGCAAGGCAAATAAGGTAGCGATTGCTTCATCTGGGGCTGTCCAACTCTTGGCTGAATTTGTCAACAGCAGTGGTAGCACTCAGTCCCAGCTTGATGCTATAGCTACTCTATACAACCTCACAACCTGCCAAGAGATTATTCCATTGATTGTCTCTTCTGGTGTTATACTCTCCTTGCTTGAACTGATCCACAGCTCAGTAAAGTCATCTCCATTGGTTGAGAAAGCAATTGGGTTGCTAGAAAACATTGTGTCTTCATCAGAGAGTGCACTTTGTGAGGCTGCTAGTACTGGGGGAACAATCAGGATACTGGTTGAGACTATTGAAGATGGATCTTTACTAAGCAAAGAGCATGCAGTGTGTATACTTCTCCTTATATGCCAGAGCTGCAGAGAGAAATATAGAGGGTTGATCTTGACAGAGGGAGTGATGCCAGGATTGCTTCAGTTAAGCTTGGATGGAACATGGAGAGCCAAATCCATGGCTCGAGAACTGTTGTTGCTTCTGAGGGACTGCTCCAATTATAGCTCAagatttaaacaaattaatcatGAGCTTATAGAACGGATAATGGAAGAAATTGAAGCAGAAGGAGAGAAATTGGCAGATACTACTTTAAGGTTGGTAGAGGAGATGATCGCAAAGCTCAATGCTTAA 987 0.4245 MEKEVVENLWNGDRESQIQAAMKLGRLSSKQRHKLEESDVMVPLVCMLHSENYEVIEAALCALLSLSFGSERNKIRIIKSGALPVFLSLLRCHSQTVMQLTLAAMLTLSSCKANKVAIASSGAVQLLAEFVNSSGSTQSQLDAIATLYNLTTCQEIIPLIVSSGVILSLLELIHSSVKSSPLVEKAIGLLENIVSSSESALCEAASTGGTIRILVETIEDGSLLSKEHAVCILLLICQSCREKYRGLILTEGVMPGLLQLSLDGTWRAKSMARELLLLLRDCSNYSSRFKQINHELIERIMEEIEAEGEKLADTTLRLVEEMIAKLNA 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2516 328 Gene3D - 3 325 IPR011989 -
Ssu8g2516 328 PANTHER U BOX DOMAIN-CONTAINING 1 308 - -
Ssu8g2516 328 SUPERFAMILY ARM repeat 4 310 IPR016024 -
Ssu8g2516 328 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 164 208 IPR000225 GO:0005515
Ssu8g2516 328 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 1 308 - -
Ssu8g2516 328 SMART arm_5 70 110 IPR000225 GO:0005515
Ssu8g2516 328 SMART arm_5 111 152 IPR000225 GO:0005515
Ssu8g2516 328 SMART arm_5 153 195 IPR000225 GO:0005515
Ssu8g2516 328 SMART arm_5 28 68 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2516 Ssu-Chr8 65033858 65035302 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2516 3 281 U-box Gene Family AT2G23140 31.930 8.33e-28 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2516 - - gmx:100778534 523.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g2516 8 65033858 65035302 Ssu8g2516 8 65033858 65035302 ECH