Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2514 ATGGAGTCACCTGTTAGTGGAGTTGAGTCCTTATCAGAGGTTCAGAATTCAGTTTCTGGGGTACATCATGATCCTCCTTCAACATATGGGACTCCCCGTCCTTCGCGGCCGCCCTTGAGAGCGTCTAGAAACCATGGGGCTAGTCATCAAACCAAGACCATCCATCATCAGAACAGCCATGTAATTAATCAAAAGCATTCTTATCAGGAGGGCAACAATGTGGAGCATGAAGGATTGCCAACAAAATTGTGCAGCAAGCAACCACTTGATGATTCCAAGAATTGTGAGTCAAGTGGTATGTTAGAATCTGAGAATTGCATCTTAGGTCCATCGAAACGAGCCGTTGCTAAGCACGCAAAGAGTTACTGTCAGTCAGAGGTTACTTTCTGTCCAAGTCCTCAGAATAGTTTCTATTCAGCCACTGTCTATTCAGAAGCCAAAGAAAGTTTCACCAACACTGAAGTCAGTGAGTGTGCTAGTATTGACAAGTCATGTGAAAGTGGAGAAGTGGCAAATTCCTGTGATTTTAATGAGAGCAGGAAGACCAGCATCTGTAGAGCAAGTACTGGCAGTGATGCTAGTGATGAGAGCAGCACCAGTGGTTTGAGTAGTGTCTTGTATAAACCTCACAAGGCAAATGACATAAGATGGGAAGCAATTCAAGCCGTCCGAGCTCGAGATGGGATGTTAGAAATGAGGCATTTCAGGTTGTTGAAGAAATTGGGGTGTGGAGACATAGGAAGTGTGTATCTAGCAGAATTGAGTGGCACAAGAACTTCTTTTGCCATGAAGATCATGAACAAGACCGAGCTGGAAAACCGCAAGAAGCTTCTGAGGGCTcagacagagagagagatattGCAGTCTTTAGATCATCCTTTTCTACCCACATTGTATACACACTTTGAGACAGAGACATTCTCCTGCTTGGTAATGGAGTTCTGCCCTGGTGGGGACCTGCATGCACTCAGGCAAAGACAACCAGGAAAGTATTTTTCGGAGCATGCTGTCAGGTTTTATGTGGCAGAAGTTCTCCTTGCTTTGGAGTACTTGCACATGCTTGGGATCATCTACAGAGACCTCAAACCGGAGAATGTGTTGGTGAGAGAAGATGGTCACATAATGCTCTCAGATTTTGATCTCTCTCTAAGGTGCACTGTCAGTCCAACTCTAGTAAAGTCATCAAACAACACCTTGGAGACAAAAAGCTCAGGAAACTGCATTCAGCCTGCTTGCATTGAGCCAACATGTGTAATGCAGCCAGACTGCATCCAACCAGCATGTTTCACGCCGCGCTTTCTATCCGGCAAATccaagaaagacaaaaagttCAAACCAAAGAATGACATGCATCATCAGGTGACCCCTCTTCCTGAGCTAATTGCGGAGCCAACAAATGCCAGATCAATGTCCTTTGTGGGGACACACGAGTACTTGGCACCGGAGATCATCAAGGGTGAAGGGCATGGAAGTGCTGTGGACTGGTGGACATTTGGGATATTCTTATATGAGCTTTTGTTTGGCAGAACGCCATTCAAAGGTGCGGCTAATCGCGCAACACTGTTTAATGTAATTGGGCAGCCTCTAAGGTTTCCAGAATCTCCCACTGTCAGCTTTGCTGCCAGGGACTTGATCAGGGGCTTACTTGTTAAAGAGCCTCAGCATCGTCTTGCCTATAGACGCGGCGCTACAGAGATAAAGCAACATCCATTCTTTCAGAATGTTAACTGGGCACTGATCCGGTGTGCAAATCCTCCAGAGGTGCCAAGGCAGGTTATGAAGCTTCCTCAAACGGAAAAGGAGCTTGGTGTGAAGCCTTCTGCTAATTATTTAGATATTGATTTCTTTTGA 1851 0.4484 MESPVSGVESLSEVQNSVSGVHHDPPSTYGTPRPSRPPLRASRNHGASHQTKTIHHQNSHVINQKHSYQEGNNVEHEGLPTKLCSKQPLDDSKNCESSGMLESENCILGPSKRAVAKHAKSYCQSEVTFCPSPQNSFYSATVYSEAKESFTNTEVSECASIDKSCESGEVANSCDFNESRKTSICRASTGSDASDESSTSGLSSVLYKPHKANDIRWEAIQAVRARDGMLEMRHFRLLKKLGCGDIGSVYLAELSGTRTSFAMKIMNKTELENRKKLLRAQTEREILQSLDHPFLPTLYTHFETETFSCLVMEFCPGGDLHALRQRQPGKYFSEHAVRFYVAEVLLALEYLHMLGIIYRDLKPENVLVREDGHIMLSDFDLSLRCTVSPTLVKSSNNTLETKSSGNCIQPACIEPTCVMQPDCIQPACFTPRFLSGKSKKDKKFKPKNDMHHQVTPLPELIAEPTNARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGRTPFKGAANRATLFNVIGQPLRFPESPTVSFAARDLIRGLLVKEPQHRLAYRRGATEIKQHPFFQNVNWALIRCANPPEVPRQVMKLPQTEKELGVKPSANYLDIDFF 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2514 616 SUPERFAMILY Protein kinase-like (PK-like) 211 595 IPR011009 -
Ssu8g2514 616 Gene3D Transferase(Phosphotransferase) domain 1 319 388 - -
Ssu8g2514 616 ProSiteProfiles Protein kinase domain profile. 235 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g2514 616 MobiDBLite consensus disorder prediction 44 59 - -
Ssu8g2514 616 PANTHER SERINE/THREONINE-PROTEIN KINASE D6PKL3 80 616 - -
Ssu8g2514 616 Gene3D Transferase(Phosphotransferase) domain 1 466 590 - -
Ssu8g2514 616 SMART serkin_6 235 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g2514 616 Pfam Protein kinase domain 469 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g2514 616 Pfam Protein kinase domain 236 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g2514 616 PANTHER FLIPPASE KINASE 1-RELATED 80 616 - -
Ssu8g2514 616 CDD STKc_phototropin_like 233 590 - -
Ssu8g2514 616 ProSitePatterns Serine/Threonine protein kinases active-site signature. 356 368 IPR008271 GO:0004672|GO:0006468
Ssu8g2514 616 MobiDBLite consensus disorder prediction 1 24 - -
Ssu8g2514 616 Gene3D Phosphorylase Kinase; domain 1 233 318 - -
Ssu8g2514 616 MobiDBLite consensus disorder prediction 1 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2514 Ssu-Chr8 65016294 65019511 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2514 143 616 AGC Kinase Gene Family AT5G47750 70.325 0.0 701
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Ssu8g2514 Pkinase 4.4e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2514 K08286 - gmx:100810909 1147.11