Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2512 ATGGAATCACCCGGCAACGAGCACGTAGTGGGTGGCGCAGAACCCAACGACGTCGTTACGCCCTTTTCCCACAGAGAAGAACCCCATAATTCCCAACCCCTCACCGGCGATGGTGCCAGTCCCGGAAAGATATTTATAGGTGGTTTAGCGAGAGAAACGACCATTGCTCAATTTATCAAGCACTTTGGTAAATATGGTGAGATCACGGATTCGGTCATCATGAAGGACAGGAAAACTGGGCAGCCTCGTGGATTCGGGTTTATAACGTACGCGGATCCCTCGGTGGTTGATAAAGTCATTGAGGATCCTCATATCATCAATGGCAAACAAGTTGAGATTAAGCGGACGATACCGAGGGGAGCTGTTGGCTCTAAGGATTTTAggacaaagaaaatttttgtaggTGGAATTCCTTCAAATGTGACTGAAGATGAATTTAGAGACTTCTTTACACGTTATGGTGAAGTCAAAGATCACCAAATAATGCGGGACCACTCCACCAATCGATCTCGTGGCTTTGGGTTTATCACATTTGACACTGAAGAAGCAGTTGATGATCTTCTATCCATGGGGAACAAAATTGAATTTGCTGGAGCTCAGGTGGAAATCAAGAAGGCTGAGCCAAAGAAGCCAAACTCAGCACCTCCGTCATCCAAGCGCTATAATGATTCGAGGTCTTCATACAGCAGTGGATACGGAGATACTTACGATGGATTCGGTGGCAGCTTTGGAGTTGGGGGTGGTTATAGGTCAGGTGGTGCTTATGGTGGTGGTAGGGGCAGTGGTGCTTATGGTGGCTATGGAAGTGAATTTGGGGGGTATGGAGGATATGTTGGTGCAATGGGGCCGTATAGAGGAGATCCCTCCCTCGGGTATGCTGGTCGTTATGGTGGAAGCTTTAGCAGAGGGTATGATCTTGGTGGGTATAGTGGACCTAGTGAGAATTATGGGGCATATggtgggggtgggggtgggggtgggggttcttctggtggtggtggtgcctaTCAAAGTGGCTATGATGGCAACCTAGGGGGTGGATATGGAGGGGCTAGTGGAGGCCCATTCTATGGGAGCAGTAGGGGAGGATACGGTGCTGGTCGATATCATCCTTATGGAAGATAA 1125 0.4524 MESPGNEHVVGGAEPNDVVTPFSHREEPHNSQPLTGDGASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDKVIEDPHIINGKQVEIKRTIPRGAVGSKDFRTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDHQIMRDHSTNRSRGFGFITFDTEEAVDDLLSMGNKIEFAGAQVEIKKAEPKKPNSAPPSSKRYNDSRSSYSSGYGDTYDGFGGSFGVGGGYRSGGAYGGGRGSGAYGGYGSEFGGYGGYVGAMGPYRGDPSLGYAGRYGGSFSRGYDLGGYSGPSENYGAYGGGGGGGGGSSGGGGAYQSGYDGNLGGGYGGASGGPFYGSSRGGYGAGRYHPYGR 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2512 374 MobiDBLite consensus disorder prediction 1 40 - -
Ssu8g2512 374 Gene3D - 42 121 IPR012677 -
Ssu8g2512 374 MobiDBLite consensus disorder prediction 205 227 - -
Ssu8g2512 374 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 118 IPR000504 GO:0003723
Ssu8g2512 374 SMART rrm1_1 131 204 IPR000504 GO:0003723
Ssu8g2512 374 SMART rrm1_1 43 114 IPR000504 GO:0003723
Ssu8g2512 374 Gene3D - 124 246 IPR012677 -
Ssu8g2512 374 SUPERFAMILY RNA-binding domain, RBD 127 238 IPR035979 GO:0003676
Ssu8g2512 374 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 130 208 IPR000504 GO:0003723
Ssu8g2512 374 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 374 - -
Ssu8g2512 374 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 1 374 - -
Ssu8g2512 374 SUPERFAMILY RNA-binding domain, RBD 32 120 IPR035979 GO:0003676
Ssu8g2512 374 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 110 IPR000504 GO:0003723
Ssu8g2512 374 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 132 200 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2512 Ssu-Chr8 64990904 64994510 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2512 42 198 Eukaryotic Initiation Factors Gene Family AT1G71770 26.590 1.66e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2512 K12741 K14314 gmx:100793209 549.666
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g2512 8 64990904 64994510 Ssu8g2512 8 64990904 64994510 ECH