Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2506 ATGAATACGACGCCGTTTATGGACAAGCAGATTATGGATCTCACTCACGGATCTTCCACTTCGCAGCACGGCAAGGACTTCATCGACCTCATGAAGCCACCACAACAAGAACATCATCATCgcgaagaagatgaagaagaagaagaagaagaaaaagcgCGTGGCAATGGGATCAACAAAGACGACATCGTTCCCAGTTATGATTTCCAACCGATTCGCCCTCTCGCCGCTTCCAATTACGATTCTGCCCCCAATTTTGGTGCCGCATTTTCTCGCCCTTGGAACTCCGATTCCAACTCCAACGCTTCCCCTCCCATCATCAAAAATTACAGTTCTCTGGATTCAATGGAACCTGCAAAGGTCATTGTAGAAAAGGACAGAAGTGCTTTTGATGCTACAATGTTGTCTGAGATTGATCATACCATGAAGAAACATATGGAAAATATGCTTCATGTTCTGGAAGGTGTTAGTGCACGGTTAACACAACTAGAAACCAGAACCCACCATCTTGAAAATTCTGTGGATAATTTGAAGGTATCTGTTGGAAATAATCATGGTAGCACTGATGGAAAATTGAGGCATCTGGAGAATATTCTTCGAGAGGTGCAATCAGGGGTGCAGACTATCAAGGACAAGCAAGATATAGTGCAAGCTCAGCTGCAGCTGGCAAAGCTACAAGTGTCTAAGACGGATCAGCAATCAGAAACGCAAACTAGTGTAATTACAGATCCTGTGCAGCAAGCTGCATCTGCTCCTATGCAATCTCAACCACAGCTTCCTACCCCTGCTAATCTTCCACAATCAATTCCTGTTGTTCCTCCACCTAATGCACCTCCTCAACCTCCTCCACAACAGGGTTTGCCACCTCCAGTTCAACTTCCAAACCAATTCTCTCAGAACCAAATCCCGGCTGCTCCTCAGagagatccatacttcccaccaCCTGTTCAGTCTCAGGAAACACCAAATCAGCAATACCAACTGCCTTTATCTCAGCAGCCACATCCCCAGCCTGGGGCACCTCTGCATCAACAATATCAACAGACCCCACATCCCCAGTACCCTCAGCCAGCGCCTCATCTACCTCAACAGCAGCCACCATCGCTTCCATCCATGAATCTGCCTCAGCTACAATCTTCACTGGGTCACCATGTTGAGGAACCACCTTATGTTCCTCCTCCTCAGAATTATCCTCCTAATGTCCGCCAGCCACCATCTCAGTCACCTACtggtcctcctcctcctcctcaacAGTTCTATGGGACATCACCCCACGCATATGAACCACCATTGAGCAGATCCGGATCAGGCTATTCTTCTGGATATGGTACATTATCTGGACCTACCGAGCAATATCGTTATGGTGGACCACCTCAGTATGGTGGCACTTCAGCTCTAAAACCACAACAACTGCCAACTGCTTCAGTGGCTCCGAGTGGCGGAAGCGGTTACCCTCAGCTCCCAACTGCCCGGGTACTCCCACAAGCAATACCTACTGCATCTGCAGTGAGTGGTGGCTCAGGTTCTGCTGGAACTGGAGGCAGGGTTTCTATCGATGATGTAGTTGACAAAGTTGCTAGTATGGGATTCCCTAGAGACCATGTGAGGGCCACTGTTCGGAAGCTGACAGAGAATGGTCAGTCAGTTGACTTAAATGCAGTGCTGGATAAGCTCATGAATGATGGTGAAGTCCAACCCCCACGAGGTTGGTTTGGTCGGTAG 1722 0.4605 MNTTPFMDKQIMDLTHGSSTSQHGKDFIDLMKPPQQEHHHREEDEEEEEEEKARGNGINKDDIVPSYDFQPIRPLAASNYDSAPNFGAAFSRPWNSDSNSNASPPIIKNYSSLDSMEPAKVIVEKDRSAFDATMLSEIDHTMKKHMENMLHVLEGVSARLTQLETRTHHLENSVDNLKVSVGNNHGSTDGKLRHLENILREVQSGVQTIKDKQDIVQAQLQLAKLQVSKTDQQSETQTSVITDPVQQAASAPMQSQPQLPTPANLPQSIPVVPPPNAPPQPPPQQGLPPPVQLPNQFSQNQIPAAPQRDPYFPPPVQSQETPNQQYQLPLSQQPHPQPGAPLHQQYQQTPHPQYPQPAPHLPQQQPPSLPSMNLPQLQSSLGHHVEEPPYVPPPQNYPPNVRQPPSQSPTGPPPPPQQFYGTSPHAYEPPLSRSGSGYSSGYGTLSGPTEQYRYGGPPQYGGTSALKPQQLPTASVAPSGGSGYPQLPTARVLPQAIPTASAVSGGSGSAGTGGRVSIDDVVDKVASMGFPRDHVRATVRKLTENGQSVDLNAVLDKLMNDGEVQPPRGWFGR 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2506 573 MobiDBLite consensus disorder prediction 244 481 - -
Ssu8g2506 573 MobiDBLite consensus disorder prediction 1 25 - -
Ssu8g2506 573 MobiDBLite consensus disorder prediction 244 262 - -
Ssu8g2506 573 PANTHER RECEPTOR-LIKE KINASE, PUTATIVE (DUF1421)-RELATED 1 573 - -
Ssu8g2506 573 MobiDBLite consensus disorder prediction 263 290 - -
Ssu8g2506 573 MobiDBLite consensus disorder prediction 318 351 - -
Ssu8g2506 573 MobiDBLite consensus disorder prediction 291 305 - -
Ssu8g2506 573 MobiDBLite consensus disorder prediction 352 369 - -
Ssu8g2506 573 Pfam UBA-like domain (DUF1421) 518 562 IPR010820 -
Ssu8g2506 573 MobiDBLite consensus disorder prediction 463 481 - -
Ssu8g2506 573 MobiDBLite consensus disorder prediction 433 447 - -
Ssu8g2506 573 PANTHER RECEPTOR-LIKE KINASE, PUTATIVE (DUF1421)-RELATED 1 573 - -
Ssu8g2506 573 MobiDBLite consensus disorder prediction 1 66 - -
Ssu8g2506 573 MobiDBLite consensus disorder prediction 387 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2506 Ssu-Chr8 64875543 64880983 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2506 1 312 Trihelix Transcription Factor Family AT5G14540 44.099 4.23e-68 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2506 - - gmx:100777464 785.793