LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu8g2500	ATGGCCTCTTCTAGCTACTCCAATTCTCCATGTGCTGCCTGCAAGTTTTTGAGAAGGAAGTGCATGCCAGATTGCATTTTTGCACCATATTTCCCTCCTGAAGAGCCTCAGAAGTTTGCCAACGTTCACAAGATATTTGGTGCAAGCAACGTGAGCAAACTCCTGAACGAGGTGCAACCCCATCAAAGAGAGGATGCTGTGAACTCTCTGGCCTATGAAGCCGAAGCACGAATAAAAGATCCAGTGTATGGTTGTGTTGGGGCCATTTCAGTGCTCCAAAGGCAAGTCCTTAGACTCCAAAAGGAACTTGATGCCACAAACGCTGATTTGATCCGCTATAGTTGCAATGAAATGCCAACTACTCATCATGGAGGGAGAAGGACGAGTGATGGAGAAGGTGGTTCCTCTCTTGGTCACTCTCATGGCTTTTATTATCCTTCTACTAATTGGAACAATGATCCTTGTGGAAATGACTACCCCAGAGGCGATATATAA	495	0.4566	MASSSYSNSPCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQVLRLQKELDATNADLIRYSCNEMPTTHHGGRRTSDGEGGSSLGHSHGFYYPSTNWNNDPCGNDYPRGDI	164

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu8g2500	164	MobiDBLite	consensus disorder prediction	116	138	-	-
	Ssu8g2500	164	Pfam	Lateral organ boundaries (LOB) domain	10	106	IPR004883	-
	Ssu8g2500	164	Coils	Coil	89	109	-	-
	Ssu8g2500	164	PANTHER	LOB DOMAIN-CONTAINING PROTEIN 4-RELATED	1	154	-	-
	Ssu8g2500	164	PANTHER	LOB DOMAIN-CONTAINING PROTEIN 25	1	154	-	-
	Ssu8g2500	164	ProSiteProfiles	LOB domain profile.	9	110	IPR004883	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu8g2500	Ssu-Chr8	64802905	64803399	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu8g2500	4	127	AS2 family	AT3G27650	79.365	2.05e-71	210

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	LOB	Ssu8g2500		LOB	8.8e-43	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu8g2500	-		-	gmx:100788656	302.367

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ssu8g2500	8	64802905	64803399	Ssu8g2500	8	64802905	64803399	ECH
	Ssu4g2089	4	42872034	42872525	Ssu8g2500	8	64802905	64803399	ECH