Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2493 ATGGCTTCCAAATATCACAACAGCCACTACAAGTGCCAGAATCCATCATTTGTTGTTATCTTCACAGTGGCCACCTTGGTGTGTTTCTCCCACTCAGCACTATCTGATCCAAGAATCTCAGAAGTGGGGCTCTACTGTGGCATACGCGAGGAACCACCAAAGGGTAACTACATCCACAGTTTCGCCAAAGAAATGGGAAGACTTCAAGAACTTGTGACCAACCACAACTGGGGCACTCACTCAGAGAACATGTCATCGTCCACCACTCCCATTTATGGTTTGGCACAATGCTTCCAAGACCTTTCCCACAATGATTGCCTTCAGTGCTTTGTTGCCAGCCGCACCAAGCTCCCTCGCTGCCTCCCTTCTTTTTCTGCTCGCATTTACCTTGATGGTTGCTTCCTTCGCTATGACAACTACAGTTTCTACACCGAAGACACTGACCCTTTGAGGGACACTGTGAACTGCACCTCCCAGTATGGTTCTGTGGTTGGTGATGGTGAGAGGTTTGTGTTTGTTGAGAGTGTTGGCAAAGTGGTTGACAGTGTGGTGAGGGAGGCAGTGACCGAGGGAGGAGGGTTTGCAATGGGAAAAGGTGAGGGAGTTTATGCCTTGGCACAGTGCTGGAAAAGTGTTGGGGGAAAAGGGTGCAGTCATTGCTTAAGGAAAGCTGGAAATGAGGTTAGAGGGTGTTTGCCTAAGAGGGAAGGGAGGGCCCTGAATTCTGGGTGTTATTTGAGATATTCAACAATTGAGTTCTACAATCAAGGAGGTGAAGATGGTGAAGGAGATGattctTCAAGAAAACGAGCCATCATAACAGCAGGGTTAATCTTGGCTGCAGCTGTTGTAGTGCTCTCTCTCGCAGCCTCTTATGTGGCCTTCACCAaattttcaaagagaaaaaAAAACAATTTCATTGAGATTCCCTCTTCCTTAAAGAATTCTAGCTTGAATTACAAATATGAAACTCTTGAGAAGGCCACAGATTATTTCAGCTCTTCAAGAAAAATAGGTCAAGGAGGAGCTGGCTCTGTATTCAAAGGGACTCTTCCAAATCGGAAAGATGTTGCTGTTAAGAGACTGGTCTTCAATAATAGACAATGGGTGGATGATTTCTTCAATGAAGTGAATTTGATTAGTGGAATACAGCACAAGAACCTTGTCAAACTATTGGGTTGTAGCATTGAAGGCCCTGAGAGCCTCATTGTGTATGAGTACCTATCAAACAAGAGCTTAGATCAATTCATTTTTGAAAACGACAAAACAAAGATTCTAAAATGGAGGCAGCGGTTTGATATAATTCTTGGAACTGCAGAAGGGCTTGCATATCTTCATGGAGGCTCTGAAATAAGAATCATCCATAGAGACATCAAAAGTAGCAATGTTCTTCTTGATGAGAATCTGAACCCCAAGATTACAGACTTTGGTCTTGCCCGGTGTTTTGGTGCTGATAAAACGCATCTAAGCACTGGAATTGCTGGAACACTAGGTTACATGGCTCCTGAGTATCTCATTCAAGGACAACTTACAGATAAAGCTGATGTGTATAGCTTTGGAGTACTTGTTCTGGAGATTTTAAGTGGCAGGAAGAATAATGTCTTCCGTGATGATTCTGGTTCCCTTTTGCAAACAGTCTGGAAGCTTTACAAATCAAACAGATTGGCTGAAGCTGTTGATCCTTGCTTGGGAGATGACTTTCCTCCAGCAGAAGCATCAAGGGTGTTTCAAATTGGATTACTATGTACACAAGCTTCTGCTTCCCTGAGGCCATCCATGGCTCAAGTTGTTTGCATgttaagtaattcaaatttggaTGTCCCTATACCAAAACAACCCCCATTTTTGAACTCTAGATTGCTAGATCAAACAGCTCCATTAGGTTTTAGCACAGACAGCTCCTCAACAAATGCATTTAAGAAGATTGGTGTGTCCTACAGCTCCTCTGAGTCCTCTAGTACATGCAGCTTAATTAGGCCATCAAGAAATGAAGAAACAATTATGGAAACTTGA 2013 0.4287 MASKYHNSHYKCQNPSFVVIFTVATLVCFSHSALSDPRISEVGLYCGIREEPPKGNYIHSFAKEMGRLQELVTNHNWGTHSENMSSSTTPIYGLAQCFQDLSHNDCLQCFVASRTKLPRCLPSFSARIYLDGCFLRYDNYSFYTEDTDPLRDTVNCTSQYGSVVGDGERFVFVESVGKVVDSVVREAVTEGGGFAMGKGEGVYALAQCWKSVGGKGCSHCLRKAGNEVRGCLPKREGRALNSGCYLRYSTIEFYNQGGEDGEGDDSSRKRAIITAGLILAAAVVVLSLAASYVAFTKFSKRKKNNFIEIPSSLKNSSLNYKYETLEKATDYFSSSRKIGQGGAGSVFKGTLPNRKDVAVKRLVFNNRQWVDDFFNEVNLISGIQHKNLVKLLGCSIEGPESLIVYEYLSNKSLDQFIFENDKTKILKWRQRFDIILGTAEGLAYLHGGSEIRIIHRDIKSSNVLLDENLNPKITDFGLARCFGADKTHLSTGIAGTLGYMAPEYLIQGQLTDKADVYSFGVLVLEILSGRKNNVFRDDSGSLLQTVWKLYKSNRLAEAVDPCLGDDFPPAEASRVFQIGLLCTQASASLRPSMAQVVCMLSNSNLDVPIPKQPPFLNSRLLDQTAPLGFSTDSSSTNAFKKIGVSYSSSESSSTCSLIRPSRNEETIMET 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2493 670 ProSiteProfiles Protein kinase domain profile. 332 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g2493 670 CDD STKc_IRAK 338 600 - -
Ssu8g2493 670 SUPERFAMILY Protein kinase-like (PK-like) 316 620 IPR011009 -
Ssu8g2493 670 ProSiteProfiles Gnk2-homologous domain profile. 151 253 IPR002902 -
Ssu8g2493 670 Gene3D Phosphorylase Kinase; domain 1 292 407 - -
Ssu8g2493 670 ProSitePatterns Serine/Threonine protein kinases active-site signature. 453 465 IPR008271 GO:0004672|GO:0006468
Ssu8g2493 670 Pfam Protein tyrosine and serine/threonine kinase 335 599 IPR001245 GO:0004672|GO:0006468
Ssu8g2493 670 Gene3D - 166 253 IPR038408 -
Ssu8g2493 670 Gene3D - 44 142 IPR038408 -
Ssu8g2493 670 Gene3D Transferase(Phosphotransferase) domain 1 408 607 - -
Ssu8g2493 670 ProSiteProfiles Gnk2-homologous domain profile. 39 142 IPR002902 -
Ssu8g2493 670 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 28 663 - -
Ssu8g2493 670 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 42 28 663 - -
Ssu8g2493 670 SMART serkin_6 332 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g2493 670 Pfam Salt stress response/antifungal 172 250 IPR002902 -
Ssu8g2493 670 Pfam Salt stress response/antifungal 60 140 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2493 Ssu-Chr8 64691647 64695410 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2493 11 497 Receptor kinase-like Gene Family AT5G40380 54.747 1.21e-177 512
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ssu8g2493 PK_Tyr_Ser-Thr 1.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2493 - - gmx:100819689 1082.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g2493 8 64691647 64695410 Ssu8g2493 8 64691647 64695410 ECH
Ssu5g1103 5 35256700 35270842 Ssu8g2493 8 64691647 64695410 ECH