Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2489 ATGGCACTTGTTAGCTTCCACACGAAGCTTTTCTGCATGGAGTTTGATCCAAGCTACTTCCAAGAGCCACATCAACTCCCATACCTTTCAAGCACTTTTCCTGCAAACCCCAGCTTGAAGCCACACACCCAAACCATGTTCCCCTCACAAAGCTCCATTCTCATTCCATCATCACCACCGCCCAAACCCATCTTCTATAACCCCAACAACACTTTCCACCATTTTCAAGACCACATCATGAATGTGCCTAACCACAACCCTGCCTTCGCGATGGAGGGTCCTTCCTCACACATCACCACGCCCTTCTATGGGATACCAACCCCTTTCTTGGGTGATGGGTCTTCCCTAGGAGGGGGCTTTGTTGACGTTCACCGTCACCACCCTGTGACGTTAGCaccaaacaacaacaaaatggtgGATGCTTTTCATGGCCACCACAAAGGCAAAGTCATGTGGGATTTTTCACAGAAAACCATGGTTCAGCCATGGGACGCTTCTTCCTCCAAGTCACCATCAACTCTTCCTCTCTCTAATGAGTatggattggtgatgatgagtGAATATCGTTGGGACACTGATCAGAGGATGCAACAGCTGAAGAAGGTAAAGGTGGAAAAGCATACCAACATCGCTATTGCTAATGATTACATAATTAAAGGACAATGGACTTCGGAAGAGGACAGTGCTCTTGTGGAATTGGTGGAACAATTCGGGCTGAAGAAATGGTCGCAAATTGCAAAGTTATTGCACGGCAGGATTGGGAAGCAGTGTCGGGAAAGATGGCACAACCATCTCCGGCCAAACATTAGGAAGGACTCTTGGACCCTGGAGGAAGACATGATTCTGATCAAAGCCCACCAAGAAGTTGGAAACAAATGGTCAGAGATTGCAAAGAGGTTGCCTGGTAGGACTGAGAACACCATCAAGAACCATTGGAACACCGCGAAGCGGCGCCGGAACTGCAAAAGGCACAACAAGAACAAGGCCACCACTTATGAAGGATCACTGCTCCATGCCTACGTCAAAAGGGTCACTGCTACTGAAGAAGCTGCAAAAGTGCTCAAGAAATCCATAAGCAAGAAGAATAAGAAGGTGGTGAGATGTGGTTGTGATGAGCTAGCTCTTTTGTTGGGCTATGACAAGTGCTCACATGATGTCTTCAATGGAAACAGCAGCGGCTATGCGCCAATGcaagtcaataataataatgctgaTGGTGGAAACATTGGTTATGGTGCAATGGCAAAGGATGATATGAAGAGGGAAATGAATCAGACGGGTGCAAAATACTGA 1293 0.4524 MALVSFHTKLFCMEFDPSYFQEPHQLPYLSSTFPANPSLKPHTQTMFPSQSSILIPSSPPPKPIFYNPNNTFHHFQDHIMNVPNHNPAFAMEGPSSHITTPFYGIPTPFLGDGSSLGGGFVDVHRHHPVTLAPNNNKMVDAFHGHHKGKVMWDFSQKTMVQPWDASSSKSPSTLPLSNEYGLVMMSEYRWDTDQRMQQLKKVKVEKHTNIAIANDYIIKGQWTSEEDSALVELVEQFGLKKWSQIAKLLHGRIGKQCRERWHNHLRPNIRKDSWTLEEDMILIKAHQEVGNKWSEIAKRLPGRTENTIKNHWNTAKRRRNCKRHNKNKATTYEGSLLHAYVKRVTATEEAAKVLKKSISKKNKKVVRCGCDELALLLGYDKCSHDVFNGNSSGYAPMQVNNNNADGGNIGYGAMAKDDMKREMNQTGAKY 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2489 430 ProSiteProfiles Myb-like domain profile. 214 265 IPR001005 -
Ssu8g2489 430 CDD SANT 222 265 IPR001005 -
Ssu8g2489 430 SMART sant 218 267 IPR001005 -
Ssu8g2489 430 SMART sant 270 318 IPR001005 -
Ssu8g2489 430 Pfam Myb-like DNA-binding domain 222 279 - -
Ssu8g2489 430 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 214 269 IPR017930 -
Ssu8g2489 430 PANTHER MYB PROTEIN-RELATED 188 350 - -
Ssu8g2489 430 Gene3D - 218 270 - -
Ssu8g2489 430 Gene3D - 273 315 - -
Ssu8g2489 430 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 270 320 IPR017930 -
Ssu8g2489 430 ProSiteProfiles Myb-like domain profile. 266 316 IPR001005 -
Ssu8g2489 430 PANTHER MYB DOMAIN PROTEIN 100-RELATED 188 350 - -
Ssu8g2489 430 SUPERFAMILY Homeodomain-like 218 312 IPR009057 -
Ssu8g2489 430 CDD SANT 273 314 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2489 Ssu-Chr8 64609753 64617698 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2489 217 344 MYB Transcription Factor Family AT4G18770 62.500 4.92e-53 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu8g2489 Myb_DNA-bind_6 3.7e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2489 K09422 - ccaj:109801641 454.907
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g2489 8 64609753 64617698 Ssu8g2489 8 64609753 64617698 ECH
Ssu4g2101 4 43358644 43361935 Ssu8g2489 8 64609753 64617698 ECH