Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2488 ATGGAGTTTGATCCAAACAGCTTCCAAGGGCCACAACAACTCCCATACCTTTCAAGCCTTTTCCCTGCAAACCACTGCTTGAAGCCACAGACTCAAACTACGTTTCCCTCACAAGGCTCCATTATTAttccaccatcaccaccacccaTCTTGTATCATCCCAACACTTTCCACCATTTTCAAGACCACATCATGAATGTGCCTACCCACAACCCTGCCTTTGTGATGGAGGGTCCTTCCTCCCACATCACCACCCCCTTATATGGGATACCAACCCCCTCTTTGGGTGATGGGGGAGCCTTTGTTAACGTTCACCGTCACCACCCTGTGACGTTAGCACCAAACCACAACAAAATAATGGATGGTTTGCATGGCCACCACAAAGGCAAAGTCATATGGGATTTCTCACAAAAAACCATGGTTCGTCCATGTGAAGCTTCTTCCTCCAAGtcacctctttctctctctaatgaGTATGGACTAGTCATGAGTGAGTATCATTGGGACATTGATCAGAGGATGCAGCAGCTAAAGAAGGTAAAGATGGAAAAGGATACCCACATTGCtaattataacataatcaaAGGGCAGTGGACTTTGGAAGAAGACAGTGCTCTTGTGGAATTGGTGAACCAATTTGGGCTGAAGAAATGGTCGCAAATTGCAAAGTTACTGTATGGCAGGATTGGGAAGCAATGTCGGGAAAGATGGCACAACCATCTCCAGCCAAACATTAGGAAGGACTCATGGACCCTGGAGGAAGACATGATACTGATCAAAGCCCACCAAGAAGTTGGAAACAAATGGTCAGAGATTGCAAAGAGGTTGCCTGGTAGGACTGAGAACACCATCAAGAACCATTGGAACGCCGCGAAGCGGCGCCGGAACTGCAAAAGGCACAACAAGAACAAGGCCACCACTTATGAAGGATCACTGCTCCATGCCTACGTCAAAAGGGTCACTGCTACTGAAGAAGCTGCAAAAGTGCTCAAGAAATCCATAAGCAAGAAGAATAGTAAGAAGGTGGTGAGATGTAGTTGCGATGAGCTAGCTCTTTTGTTGGGCTATGATCAGTGCTCACATGATGTGTTCAATGGAAACAACGGAATGCAAGTCAATAATAATGCTCATGGTGGAAACATTATGCGATGA 1152 0.4401 MEFDPNSFQGPQQLPYLSSLFPANHCLKPQTQTTFPSQGSIIIPPSPPPILYHPNTFHHFQDHIMNVPTHNPAFVMEGPSSHITTPLYGIPTPSLGDGGAFVNVHRHHPVTLAPNHNKIMDGLHGHHKGKVIWDFSQKTMVRPCEASSSKSPLSLSNEYGLVMSEYHWDIDQRMQQLKKVKMEKDTHIANYNIIKGQWTLEEDSALVELVNQFGLKKWSQIAKLLYGRIGKQCRERWHNHLQPNIRKDSWTLEEDMILIKAHQEVGNKWSEIAKRLPGRTENTIKNHWNAAKRRRNCKRHNKNKATTYEGSLLHAYVKRVTATEEAAKVLKKSISKKNSKKVVRCSCDELALLLGYDQCSHDVFNGNNGMQVNNNAHGGNIMR 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2488 383 CDD SANT 249 289 IPR001005 -
Ssu8g2488 383 PANTHER MYB PROTEIN-RELATED 169 328 - -
Ssu8g2488 383 CDD SANT 198 241 IPR001005 -
Ssu8g2488 383 SMART sant 194 243 IPR001005 -
Ssu8g2488 383 SMART sant 246 294 IPR001005 -
Ssu8g2488 383 Pfam Myb-like DNA-binding domain 198 255 - -
Ssu8g2488 383 SUPERFAMILY Homeodomain-like 192 288 IPR009057 -
Ssu8g2488 383 Gene3D - 194 246 - -
Ssu8g2488 383 ProSiteProfiles Myb-like domain profile. 242 292 IPR001005 -
Ssu8g2488 383 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 246 296 IPR017930 -
Ssu8g2488 383 PANTHER MYB DOMAIN PROTEIN 100-RELATED 169 328 - -
Ssu8g2488 383 ProSiteProfiles Myb-like domain profile. 190 241 IPR001005 -
Ssu8g2488 383 Gene3D - 249 291 - -
Ssu8g2488 383 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 190 245 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2488 Ssu-Chr8 64591729 64594749 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2488 193 320 MYB Transcription Factor Family AT4G18770 61.719 5.24e-52 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu8g2488 Myb_DNA-bind_6 2.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2488 K09422 - ccaj:109801641 456.062