Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2487 ATGGCTGCCACAGCAACTGCCTCTTCAGTGGGTCCGCGGTATGCACCACCAGACCCAACACTCCCTAAACCATGGCGGGGTCTTGTGGATGGCAAGACTGGGTATCTTTACTTTTGGAATCCCGAGACTAATGTCACCCAGTATGAGAGGCCCTCAAGCTCAGCCGCCCCACCAAAGTCTTCTTCAGTGCCTAGCTCTTCTGTCCAGGTTCAACAATCGTCTCAAGGGTTGCAACGTGGTCGAAGTCCTGATTTCAGTGATAGGTATGATAGAAATGGCAGCAGTGGGTCAAACGAAGCTGGATCACGGAACCATCAGAGTTCAAAAGGTGGAAGTTATAGTTCTCATAATGTTCCAAATGGAACAAATGTTGCTAGCAATGTCAATTCTTCTGTCAGAGGTCACGGGGCTTCGGATGCTGGAGCTGGACTATCTCCTGAGTCTTATCGACATCGGCATGAAATAACTGTGACAGGAGACAATGTGCCTCCACCCCTTACATCATTTGGGTCTACTGGCTTTCCATCTGAGATTCTGAGAGAGgtACAAAATGCTGGGTTCTCAGCCCCAACCCCAATTCAGGCACAGTCATGGCCCATTGCTCTTCAAGGTAGAGATATAGTTGCCATTGCTAAAACAGGCTCAGGGAAAACCTTGGGGTATGTAATTCCGGCATTTATTCACCTCAAGCGCTGTGGTAATAACTCCAAATTGGGCCCCACTGCATTGGTACTTTCACCAACAAGGGAGTTGGCAACACAGATACAAGATGAAGCTGTGAAGTTTGGGAAATCATCGAGAATTTCTTGTGCAtgTTTGTATGGAGGAGCACCAAAGGGTCCTCAACTGAGAGACATTGACCGTGGAGCAGATATTGTGGTGGCCACTCCTGGTCGCTTGAATGAtattcttgagatgagaagaattaGTCTTCATCAGGTCTCTTACCTGGTGCTAGATGAGGCAGACAGGATGCTGGATATGGGTTTTGAACCTCAAATTAGGAAAATTGTGAATGAGGTGCCTAATCGCAGGCAAACTCTCATGTTTACTGCAACATGGCCAAAGGAGGTTAGGAAAATTGCAGCTGATCTGCTAGTCAAGCCTGTTCAGGTGAACATTGGCAATGTAGACGAGCTTGTTGCTAACAAGTCCATTACTCAGCATATTGAAGTATTGTCACAAATGGACAAACAGAGACGGCTGGAACATATTTTGCGGTCACAGGATCAAGGAtcaaagattattattttttgttctaccAAGAAAATGTGTGATCAACTTGCTCGTAATCTGACACGTCAGTTTGGAGCTGCTGCTATTCATGGGGATAAATCCCAGGCTGAGAGGGATCATGTGTTGAATCAGTTTCGTACTGGGAGGTCTCCTGTGCTAGTAGCCACAGATGTTGCTGCTCGGGGATTGGATATCAAAGACATTAGGGTGGTTGTCAACTATGACTTCCCTACAGGAGTGGAAGATTATGTTCATAGGATTGGAAGGACTGGGAGAGCTGGAGCCACTGGGCTAGCTTACACTTTCTTTGGTGACCAGGATGCTAAATATGCTTCAGATCTCATCAAAGTTTTGGAAGGTGCAAACCAAAAGGTACCTCCAGAACTTCGTGATATGTCATCACGGGGTGGTGGTGGGATGAGCAGATCCAGACGATGGGGTTCTGGTGGACGAGGTGGACGGGGTGATTCTGGATATGGTGGAAGGAATAATGACTCAGGATATGGTGGAAGGGGTAATGATGCAGGATATGGTGGAAGAGGTAGCGATTCAAATTATGGAGGGAGGGGGACTGCTGCTTCTGGCAGAGGTGGAGGCCGTGGGTTTGACTATGACTCACAGAGGAATGACCGGGGTCGGAGTCCGGACAAGGGATCTAATTGGAGTGATCGCTACAAAAGCGTTAACCGTGATCGCAGTCGTAGTCCTGAAAGGGCTGTACTGCCTCAACATTCCCAAGGCAGCTTTCACAAGGCAATGATGGAACGTGGGGATAGTGATCGCAATAAGAGCTTTAACCGAGATCAAAGCCGCAGTCCTAGCCCTCATAAACAGGAGAGGGCTGCAGCAGTTCGAGAACGTTCCCCAGTTTACAGTTTTCATCGATCAATGATGGGACAAGGTCAATCATCCCCTTCATCTCAACGGCAGCGTGCACCCCATTACAGTGATGATTgttttaaagaagagaaaagttcAAGACATGCACGCAGTCCGAACCGAAATTCACCCTCTTCCCTGGGTGGTGGTAGGTCTAATAATAGTCCTCCAAAAGAGTGGGGGGGATCTTTGGGTGATGGAAGATATGGTGGATCTCATTCatccttcaatggagaagaggAGGAAGGGATGATCCCTGATGAAGAAGGAATGATAGGTCAAGATGATCGCATATATCAAAGTGTGGATTAG 2427 0.4619 MAATATASSVGPRYAPPDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPSSSAAPPKSSSVPSSSVQVQQSSQGLQRGRSPDFSDRYDRNGSSGSNEAGSRNHQSSKGGSYSSHNVPNGTNVASNVNSSVRGHGASDAGAGLSPESYRHRHEITVTGDNVPPPLTSFGSTGFPSEILREVQNAGFSAPTPIQAQSWPIALQGRDIVAIAKTGSGKTLGYVIPAFIHLKRCGNNSKLGPTALVLSPTRELATQIQDEAVKFGKSSRISCACLYGGAPKGPQLRDIDRGADIVVATPGRLNDILEMRRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPNRRQTLMFTATWPKEVRKIAADLLVKPVQVNIGNVDELVANKSITQHIEVLSQMDKQRRLEHILRSQDQGSKIIIFCSTKKMCDQLARNLTRQFGAAAIHGDKSQAERDHVLNQFRTGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKYASDLIKVLEGANQKVPPELRDMSSRGGGGMSRSRRWGSGGRGGRGDSGYGGRNNDSGYGGRGNDAGYGGRGSDSNYGGRGTAASGRGGGRGFDYDSQRNDRGRSPDKGSNWSDRYKSVNRDRSRSPERAVLPQHSQGSFHKAMMERGDSDRNKSFNRDQSRSPSPHKQERAAAVRERSPVYSFHRSMMGQGQSSPSSQRQRAPHYSDDCFKEEKSSRHARSPNRNSPSSLGGGRSNNSPPKEWGGSLGDGRYGGSHSSFNGEEEEGMIPDEEGMIGQDDRIYQSVD 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2487 808 SMART ww_5 20 53 IPR001202 GO:0005515
Ssu8g2487 808 Pfam DEAD/DEAH box helicase 191 361 IPR011545 GO:0003676|GO:0005524
Ssu8g2487 808 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 198 372 IPR014001 -
Ssu8g2487 808 MobiDBLite consensus disorder prediction 663 696 - -
Ssu8g2487 808 MobiDBLite consensus disorder prediction 47 146 - -
Ssu8g2487 808 Gene3D - 145 376 IPR027417 -
Ssu8g2487 808 MobiDBLite consensus disorder prediction 47 81 - -
Ssu8g2487 808 SMART helicmild6 426 506 IPR001650 -
Ssu8g2487 808 Gene3D - 11 58 - -
Ssu8g2487 808 MobiDBLite consensus disorder prediction 89 134 - -
Ssu8g2487 808 CDD WW 22 50 IPR001202 GO:0005515
Ssu8g2487 808 MobiDBLite consensus disorder prediction 1 27 - -
Ssu8g2487 808 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 318 326 IPR000629 -
Ssu8g2487 808 Pfam Helicase conserved C-terminal domain 398 506 IPR001650 -
Ssu8g2487 808 Gene3D - 377 547 IPR027417 -
Ssu8g2487 808 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 167 195 IPR014014 GO:0003724
Ssu8g2487 808 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 239 523 IPR027417 -
Ssu8g2487 808 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 40 129 641 - -
Ssu8g2487 808 MobiDBLite consensus disorder prediction 743 764 - -
Ssu8g2487 808 ProSitePatterns WW/rsp5/WWP domain signature. 25 51 IPR001202 GO:0005515
Ssu8g2487 808 MobiDBLite consensus disorder prediction 615 650 - -
Ssu8g2487 808 SMART ultradead3 186 389 IPR014001 -
Ssu8g2487 808 MobiDBLite consensus disorder prediction 707 725 - -
Ssu8g2487 808 ProSiteProfiles WW/rsp5/WWP domain profile. 19 53 IPR001202 GO:0005515
Ssu8g2487 808 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 129 641 - -
Ssu8g2487 808 SUPERFAMILY WW domain 13 52 IPR036020 GO:0005515
Ssu8g2487 808 MobiDBLite consensus disorder prediction 726 742 - -
Ssu8g2487 808 CDD SF2_C_DEAD 386 515 - -
Ssu8g2487 808 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 385 545 IPR001650 -
Ssu8g2487 808 MobiDBLite consensus disorder prediction 537 808 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2487 Ssu-Chr8 64570063 64575166 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2487 165 544 Eukaryotic Initiation Factors Gene Family AT3G19760 34.204 4.11e-68 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2487 K12823 - gmx:100816455 1232.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g2487 8 64570063 64575166 Ssu8g2487 8 64570063 64575166 ECH