LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu8g2483	ATGGAACCACCGCAGCCAGGTTCAAGAGGGGCAGAAGCACTTAAACATATATCTCCTGGATCATCAATTACTGTTGCATATCATCCATTTTTTGGACCTTATGATGACCTCCTCCTTCTAGAGCTTGATGAGAAACTTCTCCCAGATATTCTGCATGAAAGGGTGGTCTTAAGAGGACAGCCTGACGAAGACTCAGTTCTTTGTACTCAATCCAAAACATATGCTATGAAATTTGTTGGAACTTCCAATTCTGTTCTGCTTGTACCATCTGCAAATCATTCAGAATTTTATGAAAATCCACAAAAGAATGATAGCAATAATGATGAAGAGAAAGTTGTTGCACCTGTAATCAAAGTTGTATCTGGTAATATGGAGCTTATTGAGGCAGCCCCCAGACTTGATAAACTTAAATCAGTTCTGTCAGAAAAGCCTTACAATTTCGAGGAGTATGATGACATGGGAAATTTAGAAGAGAATCAGGAATGTAGAGTAGGATTATATAACTGGAATGATCTTATAAACAATATTCAAGCTAGTGATGAGGAATTAATGTCTGGACTGCGGGCTCTTTCAGCGGTTGAGATTAATGGGTATTGGAGATTAGTAGACGAGAGTTACATGGACATAATTCTGGGAATGCTTTTGAAAAATGCAGTGTTGAATGACTGGTCACTTAATGCTTTAAATGAAGATGAAGTTGTGAGTACACTGGAATCAGATGGATTTCCTGGGGTGCTTGCAAGGCATTGTTTGCATGTATATGGCAAGAAAGCAAATGAGTGCATGCATAGCTGTGTCTGGAAGTTGGATGAGAAGCGAGTGTGCGTACATTTTGCAAGAGAAATCCTGAAAGGGGGTAAGAGAGAGTTGGAGAGTTTCATGGATGAATGGAGGCAGAAGATTCCAGAGGGAATGCAACCCACTTTTGATCTTGTGGAAGGAGAGGTATTAACAGAGAGAGTTGGAGTTGAGACATGGGCTCGCGCCTTCAGTGTCGCTTCTTTGCCTTCCAATCCAGCTGAGCGTTTCCCCATTCTTTTCAGAGAGAGGCCAAAATGGCAATGGAAGGATCTGCAGCCCTATATCAGAGATCTGAATGTACCAGGTGTTTCTTCAGAAGGTTTGCTGCTCAAATACACTCGAAGGACACAACCATCACCTGATACAGAACCAGTTTTCAGTGCAAGATAG	1191	0.4148	MEPPQPGSRGAEALKHISPGSSITVAYHPFFGPYDDLLLLELDEKLLPDILHERVVLRGQPDEDSVLCTQSKTYAMKFVGTSNSVLLVPSANHSEFYENPQKNDSNNDEEKVVAPVIKVVSGNMELIEAAPRLDKLKSVLSEKPYNFEEYDDMGNLEENQECRVGLYNWNDLINNIQASDEELMSGLRALSAVEINGYWRLVDESYMDIILGMLLKNAVLNDWSLNALNEDEVVSTLESDGFPGVLARHCLHVYGKKANECMHSCVWKLDEKRVCVHFAREILKGGKRELESFMDEWRQKIPEGMQPTFDLVEGEVLTERVGVETWARAFSVASLPSNPAERFPILFRERPKWQWKDLQPYIRDLNVPGVSSEGLLLKYTRRTQPSPDTEPVFSAR	396

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu8g2483	396	PANTHER	SISTER CHROMATID COHESION PROTEIN DCC1-RELATED	17	396	IPR019128	GO:0007064\|GO:0031390
	Ssu8g2483	396	Pfam	Sister chromatid cohesion protein Dcc1	38	362	IPR019128	GO:0007064\|GO:0031390

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu8g2483	Ssu-Chr8	64478370	64480000	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu8g2483	10	396	C3H Transcription Factor Family	AT2G44580	55.612	2.67e-158	449