Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2477 ATGGAGcatgttttggaaaaaagaTTTCCTCTTAGTGCAGAAGATTACAAGTTATATGAAGAAGTTGGTGAAGGCGTGAGTGCCTCCGTATACAGGGCCCTCTGCATTCCACTCAATGAGATAGTTGCCATCAAGGTTCTTGATCTAGAGAAGTGCAATAATGATTTGGATGGCATTCGAAGAGAGGTACAGACCATGAGCTTGATTGATCATCCAAATGTTTTACGGGCACATTGCTCTTTTCCTACTGGACATAATCTATGGGTTGTGATGCCATACATGGCAGGGGGGTCTTGCCTTCATATAATGAAATCTGCCTTCCCTGAGGGTTTTGAAGAGCCTGTTATTGCTACTTTATTGCATGAAGTTCTCAAAGCTCTTGTGTATCTTCATGCCCATGGTCACATACATAGAGATGTTAAGGCTGGGAATATTCTGCTTGATTCTAATGGTGCGGTCAAACTAGCTGACTTTGGAGTGTCAGCATGTATGTTTGATAATGGAGATAGGCAACGTTCAAGAAACACTTTTGTTGGAACACCTTGCTGGATGGCTCCCGAAGTCATGCAGCAATTACATGGATATGATTTTAAAGCAGATATATGGTCATTTGGTATAACGGCACTTGAACTTGCTCATGGTCATGCCCCATTTTCCAAGTATCCACCTATGAAAGTTTTGCTTATGACTCTACAAAATGCCCCTCCAGGTCTTGATTATGAAAGAGACAAGAGATTTTCAAAGGCTTTCAAAGAGTTGGTTGCCACCTGCTTAGTAAAAGACCCAAAAAAGCGTCCAAGTTCAGAAAAGCTTTTAAAGCACCACTTCTTTAAACATGCACGTGCCAGCAAATATTTAGCTCGCACCATTCTAGATGGCCTTGCTCCTTTAGGAGATCGTTTTAGATTGCTGAAGGCTAAAGAGGCGGATTTATTGGTGCAGAACAAGGCTCTTTATGAGGATAAGGAGCAGTTATCTCAGAAAGAATATATTCGAGGAATTAGTGCCTGGAATTTTAACCTGGAGGATTTAAAAAGCCAAGCTGCTCTTATTCAAGATGATGACATACCTAATGCAGAAGAGTCACATGGGGATAAGAAGCAAAAAGACAGATTGGATGACTTCAGGGTTCCTGCTGAGGGGCTATCAGCTGGAGCAGCTAATCATTCCGATGATGCACCCACACAGGACAAGGAGGATGGATTCAATGATCTTCAGGATTTGGAGGGTTCGCTTGCTTCATTTCCTAGTAAACCTCTTCAAGCACTTAAAGGATGTTTTGATACGTGTGAGGATGACGTTAATAACAGCAGTCCAAGAGATTTGGATCATGATTATGGAAGAATTGATAATGAAAGTTCTGGGCCAAGTACATCATTGCAACAAAATGCTACCACTCAGCAAAAAAAGTTTTCAAGTGGTTCTTTGCTACctgataattttctttttcccaaaaagGTTGTTACTGATGGGGacagGGATTATCTACAAACAAAATATACTTCGGAGAGGAATCACAGTGGTCCATTGCAATATCGGCAGAAGAGAGATAGTAACAACATTGCATTGGTTGATGACACATCAGATGGAGCATTTGTCCAGCGTAGGGGGCGGTTTAAGGTCACATCGGCAGATATCAGTCCAATGGGTCCTTCAAACAGCACTTCTGGCCCAGTTGTTAGTCCTACTAGTCCAccaaatcaaaatttcatgGCTGCTACTATTCTTCCATCACTGCAGTGCATCTTGCAACAGAATGGTTTGCAGAGGGAagagattattaaattaataaagtatgcAGAGCAATCTTCTGGTAAGAATACAGAATCAGTGGAGGCAGGGACAGTTGACACCTTTCAGGCACCACCTGCAACAACTAGGGAGCGAGAGCTGTATTTTCAGGTGATTCAACTCCAACAGAGCATTGGGAGCCTTGTTGAGGAGTTGCAAAGacaaaagatgaaaaatgttcagTTAGAGAAACAGTTGAACAGTATGGTTAACAAGGTGGAAAAGTGA 2019 0.4027 MEHVLEKRFPLSAEDYKLYEEVGEGVSASVYRALCIPLNEIVAIKVLDLEKCNNDLDGIRREVQTMSLIDHPNVLRAHCSFPTGHNLWVVMPYMAGGSCLHIMKSAFPEGFEEPVIATLLHEVLKALVYLHAHGHIHRDVKAGNILLDSNGAVKLADFGVSACMFDNGDRQRSRNTFVGTPCWMAPEVMQQLHGYDFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTLQNAPPGLDYERDKRFSKAFKELVATCLVKDPKKRPSSEKLLKHHFFKHARASKYLARTILDGLAPLGDRFRLLKAKEADLLVQNKALYEDKEQLSQKEYIRGISAWNFNLEDLKSQAALIQDDDIPNAEESHGDKKQKDRLDDFRVPAEGLSAGAANHSDDAPTQDKEDGFNDLQDLEGSLASFPSKPLQALKGCFDTCEDDVNNSSPRDLDHDYGRIDNESSGPSTSLQQNATTQQKKFSSGSLLPDNFLFPKKVVTDGDRDYLQTKYTSERNHSGPLQYRQKRDSNNIALVDDTSDGAFVQRRGRFKVTSADISPMGPSNSTSGPVVSPTSPPNQNFMAATILPSLQCILQQNGLQREEIIKLIKYAEQSSGKNTESVEAGTVDTFQAPPATTRERELYFQVIQLQQSIGSLVEELQRQKMKNVQLEKQLNSMVNKVEK 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2477 672 MobiDBLite consensus disorder prediction 437 475 - -
Ssu8g2477 672 ProSiteProfiles Protein kinase domain profile. 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g2477 672 ProSitePatterns Protein kinases ATP-binding region signature. 22 45 IPR017441 GO:0005524
Ssu8g2477 672 Pfam Protein kinase domain 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g2477 672 MobiDBLite consensus disorder prediction 546 564 - -
Ssu8g2477 672 Gene3D Transferase(Phosphotransferase) domain 1 97 296 - -
Ssu8g2477 672 Gene3D Phosphorylase Kinase; domain 1 5 92 - -
Ssu8g2477 672 SUPERFAMILY Protein kinase-like (PK-like) 14 278 IPR011009 -
Ssu8g2477 672 MobiDBLite consensus disorder prediction 382 404 - -
Ssu8g2477 672 CDD STKc_OSR1_SPAK 14 277 - -
Ssu8g2477 672 MobiDBLite consensus disorder prediction 543 564 - -
Ssu8g2477 672 MobiDBLite consensus disorder prediction 451 475 - -
Ssu8g2477 672 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 669 - -
Ssu8g2477 672 SMART serkin_6 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g2477 672 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 1 669 - -
Ssu8g2477 672 Coils Coil 642 669 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2477 Ssu-Chr8 64364575 64375346 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2477 1 669 MAP Kinase Kinase Kinase Kinase AT5G14720 66.958 0.0 927
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-Fray Ssu8g2477 Pkinase 6.6e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2477 K08835 - gmx:100778837 1236.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g2477 8 64364575 64375346 Ssu8g2477 8 64364575 64375346 ECH