Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2476 ATGCCTGAAGGGAGCAAAAGGAGGATACATTTTAGCAAATTGTATAgtttttcttgtttgaaatcTCCTTTCAGAGATGGTCATTCCCAAATTGGGCAGAAGGGGTACTCAAGGGTTGTCCACTGCAATGATCCGGATAACCCTGAAGCAGTTCAGTTGAATTATGGAGGCAACTATGTTTCAACAACCAAGTATACAGCTTTTAATTTTATCCCCAAGTCTTTGTTTGAGCAGTTCAGGAGGGTTGCAAATATCTACTTTCTTATTGTTGCGTGTGTTTCATTTAGTCCATTGGCACCTTTTACTGCTCTAAGTATTGTTGCTCCGTTGCTGGTTGTGATTGGAGCTACTATGGCCAAGGAAGCTGTGGAAGATTGGAGGAGGAGAAAGCAGGATATAGAGGCAAACAACCGAAAGGTTCAGGTATATGGTAGAACTTATACATTTGTGGAGACTAGATGGAAGAAACTCCATGTTGGTGATATCATTAAAGTGTATAAGGATGAATACTTTCCTGCTGATCTTCTTCTGCTTTCATCAAGCTATGATGATGGGGTTTGTTATGTCGAGACTATGAATCTTGATGGAGAAACTAATCTAAAACTAAAGCATGCCTTGGAGGTGACAACTCATCTTCATAATGAAAAATCTCTCCAAAAGTTTAGGGCTGTGGTTAAATGTGAGGATCCTAATGAAAATCTGTACTCGTTTATTGGAACATTACAATATGATGGTAAAGAACATCCTCTTTCCTTGCAGCAGATCCTGTTGAGAGATTCTAAGCTGAAAAACACGGATTATATCTATGGTGTTGTTATCTTTACTGGCCGTGATACAAAAGTCATGCAGAATTCCACTGATCCTCCTTCCAAGAGAAgcaaaattgagagaaaaatggaTAAGATAATCTACATCCTCTTCAGTACCTTGATTTTTATATCCTTTATTGGTTCTGTCTTTTTTGGTGTTGAGACCAAAAGGGATATTAGTGCTGGAAGATATAGAAGATGGTATCTTCGTCCAGACAATACAACGGTGTTTTATGATCCTAGAAGGGCAACACTGGCTGctgttcttcattttttgactGCCATTATGTTGTATGGATATCTAATTCCGATATCACTTTATGTGTCCATAGAAATTGTGAAAGTTCTGCAGAGCATTTTCATCAACCAAGACCAGGAAATGTATTATGAAGAGACAGATAGGCCAGCTCGTGCGCGCACATCTAATTTGAATGAGGAACTTGGTCAGGTTGATACAATATTGAGTGACAAAACTGGTACTTTGACATGTAACTCCATGGAGTTTGTCAAATGTTCAATAGGGGGCATTCCATATGGTCGTGGTATGACGGAAGTGGAGAAGGCACTTGCTAGGAGAGGAAAAGATGAAGAATCTGAAGTTGATGGTGGATCATCAGATTTCTTGGGCCAGAACGATGAGGCAGTGGACTCTCAGCATCCAATTAAGGGCTTTAATTTTAGAGATGAGCGCATAATGAACGGGCAATGGGTTAATGAACCATATCCAGACTTCATACAGAGATTCTTTCGAGTTTTAGCTATTTGTCACACAGCTATTCCAGATGAAGATAAAGAGTCAGGAGAAATTTCCTATGAAGCTGAGTCACCAGATGAAGCAGCTTTTGTCATAGCTGCAAGGGAACTTGGTTTTGAGTTTTTCTCAAGGACACAAACAAGCATATCATTGCATGAATTGAATTATGAAAGTGGAAAAAAGGTTGACAGGTTGGCTAGCTCCTTTTACcatgtttatgttttagttATACATATCTGCCCTATTTTCTTATACACTCCCTGTAATTTTGGTTGCCAAAATTGTCACCTCCGATGTGagattctataa 1872 0.3782 MPEGSKRRIHFSKLYSFSCLKSPFRDGHSQIGQKGYSRVVHCNDPDNPEAVQLNYGGNYVSTTKYTAFNFIPKSLFEQFRRVANIYFLIVACVSFSPLAPFTALSIVAPLLVVIGATMAKEAVEDWRRRKQDIEANNRKVQVYGRTYTFVETRWKKLHVGDIIKVYKDEYFPADLLLLSSSYDDGVCYVETMNLDGETNLKLKHALEVTTHLHNEKSLQKFRAVVKCEDPNENLYSFIGTLQYDGKEHPLSLQQILLRDSKLKNTDYIYGVVIFTGRDTKVMQNSTDPPSKRSKIERKMDKIIYILFSTLIFISFIGSVFFGVETKRDISAGRYRRWYLRPDNTTVFYDPRRATLAAVLHFLTAIMLYGYLIPISLYVSIEIVKVLQSIFINQDQEMYYEETDRPARARTSNLNEELGQVDTILSDKTGTLTCNSMEFVKCSIGGIPYGRGMTEVEKALARRGKDEESEVDGGSSDFLGQNDEAVDSQHPIKGFNFRDERIMNGQWVNEPYPDFIQRFFRVLAICHTAIPDEDKESGEISYEAESPDEAAFVIAARELGFEFFSRTQTSISLHELNYESGKKVDRLASSFYHVYVLVIHICPIFLYTPCNFGCQNCHLRCEIL 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2476 623 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 431 582 IPR023299 GO:0000166
Ssu8g2476 623 Gene3D - 114 286 - -
Ssu8g2476 623 Pfam Phospholipid-translocating ATPase N-terminal 40 103 IPR032631 -
Ssu8g2476 623 ProSitePatterns E1-E2 ATPases phosphorylation site. 426 432 IPR018303 -
Ssu8g2476 623 MobiDBLite consensus disorder prediction 461 482 - -
Ssu8g2476 623 SUPERFAMILY Calcium ATPase, transmembrane domain M 49 418 IPR023298 -
Ssu8g2476 623 SUPERFAMILY HAD-like 412 475 IPR036412 -
Ssu8g2476 623 SUPERFAMILY Calcium ATPase, transduction domain A 145 284 IPR008250 -
Ssu8g2476 623 Coils Coil 116 136 - -
Ssu8g2476 623 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 55 576 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Ssu8g2476 623 Gene3D - 481 591 IPR023299 GO:0000166
Ssu8g2476 623 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 4 585 - -
Ssu8g2476 623 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 4 585 - -
Ssu8g2476 623 Pfam E1-E2 ATPase 136 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2476 Ssu-Chr8 64308752 64311406 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2476 9 586 Primary Pumps ATPases AT1G68710 65.068 0.0 811
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2476 K01530 - gmx:100779714 1100.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g2476 8 64308752 64311406 Ssu8g2476 8 64308752 64311406 ECH