Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2456 ATGGCTAAGGGAAGAGGTACTAGTGCAACAATATTGCTATTTTGTATGATGGTGTTTTACTTTGAGATGGTTCATGCACACACTTATGTGGTTGGGGATGAAGATGGTTGGACGTTGGACGTAGGTGATTGGCCTGACGGAAAGAGTTTTAAGGTTGGTGATGTACTTGAATTCAATTATAGTCCTTCGTCACATAACGTGGTGGTAGTCGATGAGGTAGGATACAATTCATGCAATGCTTCAGCAAGCTCAAAAACGTATCATTCAGGAAATGATCACATCCAGCTTGTCCATGGATCTAACTACTTCATTTGCACTTTTCTTGAACACTGTGTGGATGGGATGAACATTGTAGTCAATGCTGTATGA 369 0.4092 MAKGRGTSATILLFCMMVFYFEMVHAHTYVVGDEDGWTLDVGDWPDGKSFKVGDVLEFNYSPSSHNVVVVDEVGYNSCNASASSKTYHSGNDHIQLVHGSNYFICTFLEHCVDGMNIVVNAV 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2456 122 PANTHER BASIC BLUE-LIKE PROTEIN 8 120 - -
Ssu8g2456 122 SUPERFAMILY Cupredoxins 28 121 IPR008972 -
Ssu8g2456 122 PANTHER BLUE COPPER PROTEIN 8 120 IPR039391 GO:0009055
Ssu8g2456 122 ProSiteProfiles Phytocyanin domain profile. 27 122 IPR003245 GO:0009055
Ssu8g2456 122 CDD Plantacyanin 28 121 IPR041844 -
Ssu8g2456 122 Gene3D - 27 122 IPR008972 -
Ssu8g2456 122 Pfam Plastocyanin-like domain 42 115 IPR003245 GO:0009055
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2456 Ssu-Chr8 63875108 63875837 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2456 25 122 Phytocyanin Superfamily AT1G17800 40.594 1.02e-23 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2456 - - gmx:100818617 160.614