Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g2449 ATGGAGTCTGGACGGCTTTTCTTTGATGCCTCTGCTTCTTGCGGGAGCAACATGCTCTACCTCGGCAACACTGAACTCGCTTTTCgagGGAGATCGATGATGAGCATGGAGGAAGCCTCAAAGAGGCGACCTTTCTTCACCTTGCCGGATGAACTGTATGATGAGGAGTATTATGAGAAGCAGTTGCCAGAGAAGAAGCACCGCCTCAGCTCCGAACAGGTCCATCTGTTGGAGAAGAGCTTTGAGGAAGAGAACAAACTGGAGCCAGAGAGGAAGACCCAGTTGGCTAAGAAGCTGGGATTGCAGCCCAGGCAGGTGGCTGTGTGGTTTCAGAACCGCAGGGCTCGATGGAAGACCAAGCAACTTGAAAGGGATTATGATGGTCTCAAGTCTTCCTATGATTCCCTACTTTCATCCTATGATTCAATTATGAAGGAGAATGAGAAACTCAAATCTGAGGTGGTATCCTTGAATGAGAAGCTTCAAGTTCAAGCTAAAGAGGTGCCTGAGGAACCATTGTATGACAAGAAAGTTGATCCACTTCAAGTAGATAATATAGCTCCAATTTTCAGCACGAGGGTGGAGGACCACCTGAGTAGTGGGAGTGTTGGAAGTGCAGTGGTGGACGAGGGTAGTCCCCAGCTGGTCGTTGACAGTGTTGATTCATGCTTTCCAGCTGACAACTATGGTGGATGTGTGGGCCCAGTTGAAAGGGTTCAGTCAGAGGAGGAGGATGGGAGTGATGATGGGAGGAGTTACTTGGATGTTTTTGTGGTATCTGAATCTGAGCACCAAAACCATGAGGAAGGAGAGGCATTGGGTTGGTGGAGTAATATGTATTATGTTGGCTAA 852 0.48 MESGRLFFDASASCGSNMLYLGNTELAFRGRSMMSMEEASKRRPFFTLPDELYDEEYYEKQLPEKKHRLSSEQVHLLEKSFEEENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDGLKSSYDSLLSSYDSIMKENEKLKSEVVSLNEKLQVQAKEVPEEPLYDKKVDPLQVDNIAPIFSTRVEDHLSSGSVGSAVVDEGSPQLVVDSVDSCFPADNYGGCVGPVERVQSEEEDGSDDGRSYLDVFVVSESEHQNHEEGEALGWWSNMYYVG 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g2449 283 Pfam Homeodomain 65 118 IPR001356 GO:0003677
Ssu8g2449 283 SUPERFAMILY Homeodomain-like 65 131 IPR009057 -
Ssu8g2449 283 ProSitePatterns 'Homeobox' domain signature. 95 118 IPR017970 GO:0000981|GO:0006355
Ssu8g2449 283 SMART HOX_1 63 124 IPR001356 GO:0003677
Ssu8g2449 283 Gene3D - 63 126 - -
Ssu8g2449 283 Coils Coil 133 167 - -
Ssu8g2449 283 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT5 1 256 - -
Ssu8g2449 283 CDD homeodomain 65 121 IPR001356 GO:0003677
Ssu8g2449 283 Pfam Homeobox associated leucine zipper 120 162 IPR003106 GO:0006355|GO:0043565
Ssu8g2449 283 PRINTS Lambda-repressor HTH signature 100 116 IPR000047 GO:0003677
Ssu8g2449 283 PRINTS Lambda-repressor HTH signature 91 100 IPR000047 GO:0003677
Ssu8g2449 283 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 256 IPR045224 GO:0003700
Ssu8g2449 283 ProSiteProfiles 'Homeobox' domain profile. 60 120 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g2449 Ssu-Chr8 63764069 63766601 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g2449 1 276 Homeobox Transcription Factor Family AT3G01470 57.801 1.23e-97 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Ssu8g2449 Homeodomain 6.4e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g2449 K09338 - gmx:100813420 507.294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g2449 8 63764069 63766601 Ssu8g2449 8 63764069 63766601 ECH